Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23890 181 / 9e-54 NHL domain-containing protein (.1.2) AT3G14860 98 / 2e-22 NHL domain-containing protein (.1.2) AT1G70280 94 / 7e-21 NHL domain-containing protein (.1.2) AT1G23880 93 / 1e-20 NHL domain-containing protein (.1) AT5G14890 85 / 7e-18 NHL domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030849 [exp] 544 / 0 AT1G23890 271 / 7e-88 NHL domain-containing protein (.1.2) Lus10014529 [exp] 85 / 6e-18 AT5G14890 355 / 8e-115 NHL domain-containing protein (.1) Lus10032158 [exp] 84 / 1e-17 AT1G70280 342 / 2e-113 NHL domain-containing protein (.1.2) Lus10039484 [exp] 84 / 2e-17 AT1G70280 423 / 1e-143 NHL domain-containing protein (.1.2) Lus10029176 [exp] 78 / 2e-15 AT1G70280 540 / 0.0 NHL domain-containing protein (.1.2) Lus10012989 [exp] 77 / 5e-15 AT1G70280 538 / 0.0 NHL domain-containing protein (.1.2) Lus10030637 [exp] 75 / 1e-14 AT1G70280 244 / 3e-76 NHL domain-containing protein (.1.2) Lus10030850 [exp] 72 / 2e-13 AT1G23880 464 / 2e-158 NHL domain-containing protein (.1) Lus10039421 [exp] 69 / 4e-13 AT1G23880 329 / 1e-110 NHL domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G129500 [exp] 228 / 1e-71 AT1G23890 247 / 3e-78 NHL domain-containing protein (.1.2) Potri.004G087300 [exp] 220 / 1e-68 AT1G23890 261 / 9e-84 NHL domain-containing protein (.1.2) Potri.011G107800 [exp] 102 / 9e-24 AT3G14860 553 / 0.0 NHL domain-containing protein (.1.2) Potri.001G387500 [exp] 97 / 7e-22 AT3G14860 534 / 0.0 NHL domain-containing protein (.1.2) Potri.008G147700 [exp] 92 / 2e-20 AT1G70280 568 / 0.0 NHL domain-containing protein (.1.2) Potri.010G094200 [exp] 92 / 3e-20 AT1G70280 511 / 5e-179 NHL domain-containing protein (.1.2) Potri.016G092200 [exp] 87 / 8e-19 AT1G70280 465 / 3e-160 NHL domain-containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030639 pacid=23140615 polypeptide=Lus10030639 locus=Lus10030639.g ID=Lus10030639.BGIv1.0 annot-version=v1.0 ATGGCGGCTACTATCTCGCTCTTCGTCGTTTACCTAGCTGTAACTATGACTTCCCTCTCGTCATCATCTGAAGCCGGCCTCGTACTGGAAGATGGGTACA CAGTAACCACCGTGATCGACGGCCACAAGCTCAATATAAACCCTTATCTCGTCCACCCACTTCGAGACTCCTCCGATCTCGTCGTCCTCAACTATGCCGC CGGCGTCTTTACACAGCCGCTTTCCCAGCTTCACCCAGCGGGCAACCACGCAATCAGAAAGATAAGCAGCTCAGGCGTGACAACGATCGCTGGTGGATCG TCCAACAAAGTGGGCAAGGATGATGGCCCTGCCCAGAACGCAACTTTCTCCAGCGATTTCGAGCTGGTTTTTGTGGCTCAGCAATGTGCATTACTGGTTG CTGATCATGGAAACCAGTTGGTTCGTCGGATCGCTCTCAAGTCAGAAGATTGCTCCACAGAGCCTCCCGCATCACCAGGGTTAGGAGCTGCCCCATGGTG GATTCTTGGACTGGGACTTTCATGTGTATTCGGCATAGCTGTTGGACTTGCAATTCGCCATTATATCATCCCACATCTAAGTGAACAACCCTACAACCGC TTTTGGTTCCGCAAGACTTGGAAGCTTTCGGTAATCAAGCTGGTGAAAGAAGCTTGGACTCTATGCTTCGTCATCAGAAGCGGAGTTGCTAGTTTACGTC CTCTCTACACGCTCGTCAGACAGCTCATACTGATGAGCATGTCTCTTGTTTTGCTAATGTTTAGGATTAACCCTGTAGGCTCCCGAGCTCCTGCCCCGAG AAAGGATTTTGTCTCTCCGATTGATTCGGATATCAACATGCTATCATCAAACCCGGACGTGACGGATTCGGATATCGACCTGCTATCACCAGACCCATAC GTGACGGTTTCTTCTTCAGACGGTCCTGGAAGGATAGACAGGATGATTGAAGCTAACGTTGCGGAATTTGCTTTCTCGGGCAAGGAACCTACTCAGGTTG AAGGGTCTATGCCTGTAAATTTGGGTTTGGTTAGGAGGAGATGA
AA sequence Show only first row Show all	>Lus10030639 pacid=23140615 polypeptide=Lus10030639 locus=Lus10030639.g ID=Lus10030639.BGIv1.0 annot-version=v1.0 MAATISLFVVYLAVTMTSLSSSSEAGLVLEDGYTVTTVIDGHKLNINPYLVHPLRDSSDLVVLNYAAGVFTQPLSQLHPAGNHAIRKISSSGVTTIAGGS SNKVGKDDGPAQNATFSSDFELVFVAQQCALLVADHGNQLVRRIALKSEDCSTEPPASPGLGAAPWWILGLGLSCVFGIAVGLAIRHYIIPHLSEQPYNR FWFRKTWKLSVIKLVKEAWTLCFVIRSGVASLRPLYTLVRQLILMSMSLVLLMFRINPVGSRAPAPRKDFVSPIDSDINMLSSNPDVTDSDIDLLSPDPY VTVSSSDGPGRIDRMIEANVAEFAFSGKEPTQVEGSMPVNLGLVRRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23890			NHL domain-containing protein ...		Lus10030639 [exp]	0	1
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Lus10012908 [exp]	4.5	0.8976
AT5G20040		ATIPT9	ARABIDOPSIS THALIANA ISOPENTEN...		Lus10027928 [exp]	5.1	0.8991
AT5G44090			Calcium-binding EF-hand family...		Lus10008247 [exp]	5.6	0.9019
AT2G04560		AtLpxB	lipid X B, transferases, trans...		Lus10035357 [exp]	6.9	0.8942
AT1G19340			Methyltransferase MT-A70 famil...		Lus10032722 [exp]	8.8	0.8836
AT1G79020			Enhancer of polycomb-like tran...		Lus10034778 [exp]	9.2	0.8749
AT5G54890			RNA-binding CRS1 / YhbY (CRM) ...		Lus10040080 [exp]	10.0	0.8974
AT4G27680			P-loop containing nucleoside t...		Lus10008835 [exp]	10.2	0.8642
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10017553 [exp]	12.6	0.8985
AT4G11640		ATSR	serine racemase (.1)		Lus10008490 [exp]	12.7	0.8962

Compare expression of checked genes

Lus10030639 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.