Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54630 369 / 1e-121 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030584 [exp] 963 / 0 AT3G54630 471 / 7e-161 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G208700 [exp] 544 / 0 AT3G54630 429 / 3e-144 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03801 [flax] [poplar] Ndc80_HEC HEC/Ndc80p family
Representative CDS sequence Show only first row Show all	>Lus10030643 pacid=23140680 polypeptide=Lus10030643 locus=Lus10030643.g ID=Lus10030643.BGIv1.0 annot-version=v1.0 ATGAGAGGTAGTCGTCGCCGGCAGAAAGAATCCTTCAACCCTCAGCCGACGCCTGACCACCACAACAACAACCGCCAGTTCCCCTACGGAAACACCTCTC GTGACTCCGACGCCAGCTTCGCCAGTAGTCGTCCTTCTTTAGTCGGCGTCGGCCGCTCCTCCATCACTCCCTTAGATGCCTACACCGACCGCTCCCAACA ACATTCTGCGGTACGATCCATCAACTCCTATCTCAACTCTCACTCCTCTCTCCTCTCGCTTCGGACTCACCCAATCTCCTCCAGCAAAGAGATCACCGAA ACCCTACAATTCCTTCTCCATCAGCTCGACTACCCGGTCTCCAAGCTTGAGGATGAACTATTCTCTATACTTAAACTCCTCAATTGCCCCTTCAAGTTCA ACAAATCTGCTCTCCGCGCCCCCAACACTCCTCATAATTTCCCTTCCTTCCTCGCCCTAATCCACTGGCTGGTTCAGATTGCCATGTGTAAGGAGAACCT CGCCGAGAATTCCAATTCATTTCTCCAGCACAACAGTATTCTTGTTTATTCATCTGACAGTTACTTCAACTACATTCGCGGCGATGACGAGTCCGTGGAG GCTTTAGATACGGAGTTCCTAGAGAAGCTGGAGAATGATAGGAATGGCGTGTCCGAGAGTATTAAGGTTTTACAGACGACTGGTGATGAATTAGCTGCCA GAGCAGAAGCTTTGAAATTAGGGCCAACGGAAAAGGACAAGTTGGAGAAAGAGAAGGCTGTTTTGCAAGAGGATGTCACCAAGTTCCATGCCATGATTCA AGAGTTTAATCAGAGCATTGAGGCCAGGGTGATGGTATTGGAAGACAAATCGAATGCACTTCAAACCAAAGTCGTGGAGAAAAAAAGGATAGATGTGGAG AATGAGGAGTTGAGAAAACAGGTGGAAAGCCAGAGTTTCAATGCTAGGGATGCTGAAAGGATGAAGAGGGAGTTGCAGGCTGTGGAGAGAGATATTGGGG AAGCGGAACATGCAAGGAATGTATGCGAGGAGAAGGTATGGGACCTTGACTCCACACTTGGTCATAAACTGAAGGAGCTTGACGCATTGGCCATGAATTG CAACCAGGAGGCCAAGAGATTGAAGTTTGACAACATATTTCAGTTTTCCCTGAATGCCAAGGGATCCACACCTGCTGAAGTAATGGGGATTGACTACAAG TCTGCACTTAAACCGAAACTTGGTTCCATTACTGATGATATTAAGAAAAGATCTGTGTCAAATTTGGAGGATATGGCTTTACTTCAGAAACAATCATCCA AATTAACGTCTAACATAGACAGCAAACGAAACCGTTTTGCCCAGATCCAATCTCATATTGATGAAATGGAAGGCCAGATGAATTTCTGGAAAAAAGAAAC AGAAGATTATCTGACGAGATGTGACTTGGAAGGAAAAAACTTGGTACAAGTCATAGACAGTGAGGCTCATAACTTAGTGTCAGTGGAAAGAGAAGCAGCA GCTATTTTGCAGGTACACCCATTTCTTTTCTATGGTACTCACTCTTTGTATAATGAGTAA
AA sequence Show only first row Show all	>Lus10030643 pacid=23140680 polypeptide=Lus10030643 locus=Lus10030643.g ID=Lus10030643.BGIv1.0 annot-version=v1.0 MRGSRRRQKESFNPQPTPDHHNNNRQFPYGNTSRDSDASFASSRPSLVGVGRSSITPLDAYTDRSQQHSAVRSINSYLNSHSSLLSLRTHPISSSKEITE TLQFLLHQLDYPVSKLEDELFSILKLLNCPFKFNKSALRAPNTPHNFPSFLALIHWLVQIAMCKENLAENSNSFLQHNSILVYSSDSYFNYIRGDDESVE ALDTEFLEKLENDRNGVSESIKVLQTTGDELAARAEALKLGPTEKDKLEKEKAVLQEDVTKFHAMIQEFNQSIEARVMVLEDKSNALQTKVVEKKRIDVE NEELRKQVESQSFNARDAERMKRELQAVERDIGEAEHARNVCEEKVWDLDSTLGHKLKELDALAMNCNQEAKRLKFDNIFQFSLNAKGSTPAEVMGIDYK SALKPKLGSITDDIKKRSVSNLEDMALLQKQSSKLTSNIDSKRNRFAQIQSHIDEMEGQMNFWKKETEDYLTRCDLEGKNLVQVIDSEAHNLVSVEREAA AILQVHPFLFYGTHSLYNE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54630			unknown protein		Lus10030643 [exp]	0	1
AT3G26990			ENTH/VHS family protein (.1)		Lus10020327 [exp]	8.5	0.7618
AT2G47620		CHB1, ATSWI3A	SWITCH/sucrose nonfermenting 3...		Lus10043188 [exp]	9.5	0.7703
AT4G39100		SHL1	short life, PHD finger family ...		Lus10028801 [exp]	16.1	0.7057
AT2G27285			Coiled-coil domain-containing ...		Lus10020557 [exp]	16.5	0.7055
AT1G02880		TPK1	thiamin pyrophosphokinase1 (.1...		Lus10010283 [exp]	17.9	0.7383
AT1G09230			RNA-binding (RRM/RBD/RNP motif...		Lus10019754 [exp]	18.0	0.7243
AT3G10480	NAC	ANAC050	NAC domain containing protein ...		Lus10040422 [exp]	23.3	0.6715
AT5G01270		CPL2, ATCPL2	carboxyl-terminal domain (ctd)...		Lus10027766 [exp]	24.5	0.6739
AT1G02840		ATSRP34, SR1, S...	Serine/Arginine-Rich Protein S...		Lus10008218 [exp]	33.2	0.7194
AT1G79020			Enhancer of polycomb-like tran...		Lus10033318 [exp]	33.8	0.6940

Compare expression of checked genes

Lus10030643 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.