Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26830 920 / 0 Threonyl-tRNA synthetase (.1) AT2G04842 397 / 1e-125 EMB2761 EMBRYO DEFECTIVE 2761, threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative (.1) AT1G17960 345 / 6e-109 Threonyl-tRNA synthetase (.1) AT5G40230 188 / 2e-52 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G40240 183 / 8e-51 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT3G28050 181 / 4e-50 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G15540 169 / 5e-46 EamA-like transporter family (.1) AT1G18130 162 / 9e-46 Class II aaRS and biotin synthetases superfamily protein (.1) AT5G40210 166 / 3e-45 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G44800 153 / 3e-40 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030841 [exp] 1179 / 0 AT5G26830 1007 / 0.0 Threonyl-tRNA synthetase (.1) Lus10005351 [exp] 1072 / 0 AT5G26830 1088 / 0.0 Threonyl-tRNA synthetase (.1) Lus10021402 [exp] 1070 / 0 AT5G26830 1093 / 0.0 Threonyl-tRNA synthetase (.1) Lus10030842 [exp] 454 / 4e-152 AT3G28050 244 / 1e-78 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10012360 [exp] 377 / 5e-118 AT2G04842 1035 / 0.0 EMBRYO DEFECTIVE 2761, threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative (.1) Lus10030843 [exp] 240 / 4e-72 AT5G26830 248 / 2e-77 Threonyl-tRNA synthetase (.1) Lus10039425 [exp] 201 / 5e-57 AT3G28050 453 / 4e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039479 [exp] 200 / 1e-56 AT3G28050 457 / 1e-161 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039478 [exp] 187 / 7e-52 AT3G28050 385 / 2e-133 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G145600 [exp] 1001 / 0 AT5G26830 1100 / 0.0 Threonyl-tRNA synthetase (.1) Potri.010G096500 [exp] 770 / 0 AT5G26830 827 / 0.0 Threonyl-tRNA synthetase (.1) Potri.014G162200 [exp] 390 / 6e-123 AT2G04842 1089 / 0.0 EMBRYO DEFECTIVE 2761, threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative (.1) Potri.001G337100 [exp] 202 / 3e-57 AT3G28050 367 / 4e-126 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G032100 [exp] 183 / 9e-51 AT3G28050 224 / 3e-70 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.015G073200 [exp] 177 / 9e-49 AT5G40240 254 / 4e-82 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.010G096550 [exp] 170 / 5e-48 AT1G17960 219 / 2e-69 Threonyl-tRNA synthetase (.1) Potri.008G145800 [exp] 174 / 9e-48 AT3G28050 283 / 2e-93 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G192900 [exp] 166 / 8e-45 AT3G28050 222 / 1e-69 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176200 [exp] 151 / 2e-39 AT4G08300 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0458 [flax] [poplar] IIaaRS-ABD PF03129 [flax] [poplar] HGTP_anticodon Anticodon binding domain CL0072 [flax] [poplar] Ubiquitin PF02824 [flax] [poplar] TGS TGS domain CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family CL0094 [flax] [poplar] Peptidase_ME PF07973 [flax] [poplar] tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain CL0040 [flax] [poplar] tRNA_synt_II PF00587 [flax] [poplar] tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T)
Representative CDS sequence Show only first row Show all	>Lus10030645 pacid=23140538 polypeptide=Lus10030645 locus=Lus10030645.g ID=Lus10030645.BGIv1.0 annot-version=v1.0 ATGGCTCGTATAGGAGTAACGGCGGTAATGGTGGCATTGGAAGTCGTGGAAGTCGGAGTAAGCACCGTTTTCAAAGCAGCCATGGACGACGGCCTCCTGA ACCAGTTTGTCTTTATCGTTTACTCGAACGTCTTGGCACTTCTCGTCATCTCCGCAAGTTGCTCGCTCTTCTACAGGAAGAGGGATTTGCCCATGCTTCC TTGGAACATAGTGTTCAGGATCCTCCTTCTGGCCATTATCGGGTTTTTTGTGCAGATACTGTTGGTAGTTGGAGTGAAGTACAGCTCTCCAACAATGAAC TCTGCAATGCTTGATCTCACCCCTGCTTATACCTTCTTGCTTGCTCTACTCTCGAGGAGCAATCAAGCTAAGTTGATCGGGACCATTGTTTCGATTGCCG GAGCTTTGATCATTTCTTTATACAAAGGCCAACCAATTCAGACTATGAAGCTTCAGCTCGATGTCCAATTGGGTACTCGGAGGCATTTTCTGTGCAGCTG GTTCGTTCGGCCTAGCATTGGGTCGTGGGTTTTGAAGGACTACCCTGAAGAATTGATCGTGATGTTCGTAGGTTCAGCCATGGGCACGACGCTATCTGCT GCAGCTTCTATGGTTCTGGTGCATGATCCAAATGCATGGGCAGTAAGGATGGATATTGGACTATTAGCTACTGCATCCAGTGGTGTTTTGTGTCTAGCTC TTAAAGGTTCAGTGCATGCATGGGCCTCGAAGAAGAAAGGGCCAGTTTATGTTGCCATGTTCAAGCCACTTAGAATGGTTATTGCAATGGCTCTGGGAAT TTTGTTCCTTGGAAACTCTGTTTTTCTTGGAAGGGTGATTGGAGCCGTGATTATCGCGTTAGGATTTTATGTCGCGATGTGGGGTAAAGCTCAAGAACTT GAGGCAGATGGTATCGTGAAGGAAGGTCAGAGGTGGTTGTCGAGTCCTTGGGACATTGCGAAGGAGATTTCGGAGAGTTTTGCTTCCAAAGCATTGATTT CTCAAGTCAATGGAGTGTTGTGGGATATGAAACGCCCGTTCGAAAGTGATTGTGAGCTGAAATTGTTTACCTTCGAAGATGACGAAGGGCGTGATGCTTT CTGGCACTCCAGCGCTCATATTCTTGGCCAGTCACTGGAACAGACATATGGTTGCAAGCTCTGCATTGGACCTTGCACCACAAAAGGGGAGGGATTCTAT TATGATGCGTTCTATGGAGAACTCAGTTTCAATGAGGATCACTTGAAGAAAATCGAAGCTGAAGCCTCGAAAGTTGCTAAGCAAGCACAAGAATTCGAGC GTATTGAAGTCACAAAGGAACAGGCCCTTGAGATGTTCTCCGACAACAAATTTAAGGTTGAAATCATAAACGATCTGCCTGAGAATGAAAATGTTACGGT GTACAGATGTGGTCCATTGGTAGATCTGTGTCGCGGTCCACATATCCCGAACACATCTTCTGTAAAGGAACTTGCATGCTTGAAGGCTTCTTCTGCTTAT TGGAAGGGGGACAAGGACCGCGAAAGTTTGCAGAGAGTCTATGGTATATCATATCCTGACAAGAAGCAGCTGAAGGACTATAAAACCAATCTGGAAGATG CAAAGAAGTATGATCACAGGGCATATGGGACTAAGCAGGAGCTTTTCTTCTGCCATCCTCTAAGCCCTGGAAGTTGGTTCTTCCTTCCTCGTGGGACACG GATATACATGAAACTACAGGAATTTATTAGAGCTCAATATCGGGAGAGGGGTTATGACGAGGTTATATCCCCAGATATCTTCAACATTGAACTATGGGAG ACATCGGGGCACGCCAAAAACTACAAGCAAAACATGTTCTTGCTTGATATCAACAAGCAAGAATTTGGACTGAAACCAATGAATTGTCCTGGGCATTGTT TGATATTCCTGGAGAAAGTTCGATCTTACAGAGAACTTCCTCTTCGTCTGGCAGATTTCGGTTGTTTGCACCGAAATGAGGCTAGTGGTGCACTCACAGG ATTAACTCGCGTTCGAAGGTTTCAACAGGATGATGCACATATCTTCTGCAGGGAGAGCCAGATAAAAGAAGAAGTGAGAGGTGTTTTAGAATTTATTGAT TCCGTGTACAAAGTATTTGGATTCGAATACGAGCTGAAGCTCTCTACGAGGCCAGAAAATTACGAGGGGGAATTGAATACATGGGCCACAGCCGAGGCTG CCCTGACTGAAGCGTTGAATGAGTTTGGGAAGCCTTGGCAGATAGATGAAGGCGATGGTGCTTTCTACGGTCCTAAGATAGATATTAGTGTATGCGATGC ATTGAAAAGGAAACACCAGTGTGCCACATTGCAGCTCGACTTCCAGCTGCCAAGGAAATTCGATTTGAAGTACTCCACGGAGCAGTCCGCAGAGGATGAA GACAAGTTTGAAAGACCAGTGATGATACACAGGGCCATACTGGGATCTGTGGAGCGTATGATAGCTATACTGGTGGAGCACTATAAGGGGAAGTGGCCTT TCTGGCTAAGTCCTCGTCAAGCAATCGTCTGCCCCGTCTCTGACAAGTCTATTGACTATGCTAAACAAGTACGTGATCAGATTCACGCAGCAGGATATGA TGTTGATGCTGATTTAACTGACAGAAAGATCAATAAAAAGATCAGAGATGCCCAGGAAGCACAGTACAACTACATACTAGTCGTGGGCGAAAAGGAAGCC GAGAATGGCCAGGTGAGTGTACGGGAGAGAGGTAACGCAGAACACTCGGTTAAGAGCGTGAGTGTACGGGAGAAAGGTAACGCAGAACACTCAGTTAAGA GCATTGAAAGCTTGCTGCAAGATTTCAAGGATGAAGCTAGCCGCAAAGGTGTCCGTAAAGCCCTAGACAACAACTCTTCACCTAGCTCGAAGATTGGGAG CCAAATTCGTATCAGAGATTGGCTGCCGTGGAAAAACCAACTTCTATATCTCGTTGCTATAACGTGCTTTGTCGCTTACAGCATCTTTTTCTTTTCGAAC TCATGA
AA sequence Show only first row Show all	>Lus10030645 pacid=23140538 polypeptide=Lus10030645 locus=Lus10030645.g ID=Lus10030645.BGIv1.0 annot-version=v1.0 MARIGVTAVMVALEVVEVGVSTVFKAAMDDGLLNQFVFIVYSNVLALLVISASCSLFYRKRDLPMLPWNIVFRILLLAIIGFFVQILLVVGVKYSSPTMN SAMLDLTPAYTFLLALLSRSNQAKLIGTIVSIAGALIISLYKGQPIQTMKLQLDVQLGTRRHFLCSWFVRPSIGSWVLKDYPEELIVMFVGSAMGTTLSA AASMVLVHDPNAWAVRMDIGLLATASSGVLCLALKGSVHAWASKKKGPVYVAMFKPLRMVIAMALGILFLGNSVFLGRVIGAVIIALGFYVAMWGKAQEL EADGIVKEGQRWLSSPWDIAKEISESFASKALISQVNGVLWDMKRPFESDCELKLFTFEDDEGRDAFWHSSAHILGQSLEQTYGCKLCIGPCTTKGEGFY YDAFYGELSFNEDHLKKIEAEASKVAKQAQEFERIEVTKEQALEMFSDNKFKVEIINDLPENENVTVYRCGPLVDLCRGPHIPNTSSVKELACLKASSAY WKGDKDRESLQRVYGISYPDKKQLKDYKTNLEDAKKYDHRAYGTKQELFFCHPLSPGSWFFLPRGTRIYMKLQEFIRAQYRERGYDEVISPDIFNIELWE TSGHAKNYKQNMFLLDINKQEFGLKPMNCPGHCLIFLEKVRSYRELPLRLADFGCLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKEEVRGVLEFID SVYKVFGFEYELKLSTRPENYEGELNTWATAEAALTEALNEFGKPWQIDEGDGAFYGPKIDISVCDALKRKHQCATLQLDFQLPRKFDLKYSTEQSAEDE DKFERPVMIHRAILGSVERMIAILVEHYKGKWPFWLSPRQAIVCPVSDKSIDYAKQVRDQIHAAGYDVDADLTDRKINKKIRDAQEAQYNYILVVGEKEA ENGQVSVRERGNAEHSVKSVSVREKGNAEHSVKSIESLLQDFKDEASRKGVRKALDNNSSPSSKIGSQIRIRDWLPWKNQLLYLVAITCFVAYSIFFFSN S

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26830			Threonyl-tRNA synthetase (.1)		Lus10030645 [exp]	0	1
AT2G36780			UDP-Glycosyltransferase superf...		Lus10027739 [exp]	3.3	0.8887
AT4G27290			S-locus lectin protein kinase ...		Lus10034815 [exp]	7.5	0.8628
					Lus10036060 [exp]	14.5	0.8209
AT4G12545			Bifunctional inhibitor/lipid-t...		Lus10024624 [exp]	15.5	0.8622
AT1G58170			Disease resistance-responsive ...		Lus10017231 [exp]	23.5	0.8479
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013333 [exp]	23.8	0.8229
AT1G28590			GDSL-like Lipase/Acylhydrolase...		Lus10000523 [exp]	27.5	0.8457
AT2G41480			Peroxidase superfamily protein...		Lus10020826 [exp]	28.6	0.8572
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10032406 [exp]	29.5	0.8417
					Lus10018424 [exp]	45.1	0.7815

Compare expression of checked genes

Lus10030645 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.