Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029186 [exp] 85 / 1e-18 AT1G24020 78 / 2e-16 MLP-like protein 423 (.1.2) Lus10029184 [exp] 82 / 9e-18 AT1G24020 84 / 1e-18 MLP-like protein 423 (.1.2) Lus10016109 [exp] 69 / 3e-13 ND / Lus10029182 [exp] 60 / 3e-10 AT1G24020 88 / 1e-20 MLP-like protein 423 (.1.2) Lus10010702 [exp] 59 / 5e-10 AT1G24020 79 / 4e-17 MLP-like protein 423 (.1.2) Lus10021453 [exp] 52 / 1e-08 ND / Lus10010698 [exp] 52 / 1e-07 AT1G24020 94 / 2e-22 MLP-like protein 423 (.1.2) Lus10005397 [exp] 49 / 5e-07 ND / Lus10005395 [exp] 49 / 8e-07 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030648 pacid=23140726 polypeptide=Lus10030648 locus=Lus10030648.g ID=Lus10030648.BGIv1.0 annot-version=v1.0 ATGATTTTGCCAAATTACGTCGTGCTTATGTCGACGGAGAACCACCAGTACTTGCGATGCAGCTACTCCACGGAAGGAACCGAGTACTTAACCGCCGAGA TGGATTTCAGCTCATCAAAGGGACTCCTGAGGTTCACCGGCGGCGACGCCACAGCTCCTCACGCAACCTTCGAGGTGACCCCGGCCACGTCGAGGACGGC ACCAGAAGACTCATTCCACCTCAAGTGCATGCTGAACAACAAGTACGTGGTGGGCGTCCGTTACCGAGCCCGAAGTCGGGCAGTGATCGTCACCTTATTC TGCGCCGCCGGTGATGCCATGTTGGAAGACCAATCGAACCCCAACTGCACCCTTTTCCGCGCCGTCAACGGTAACGGTAACCGTCACGGTCACGGGGAGA TGGCCCAGTTCCAGCACTTGTACGGAAGGCGCTTCGTGGGGTTCTCCACGTGGAACGGCGTTCCTTTACTGACTAACGTGACGGGACGGCAGAGAGGGGA TGATGTGTGGGTGTGTGATTGGGAAGCTATGCCCATGGCGATGGTCGAGTCAGCCAATTATCGGGACTTTGAGGTGCGGTTACCGAGGTACGTCGCGATT AAGTCGAGGCTCAACGGGAAGTACTTGCGTTACGTGAATCAGCCAGGGACCAAATATCACGGGTATGTGCATTTATCGTCGACAACCACTAGTTTATAA
AA sequence Show only first row Show all	>Lus10030648 pacid=23140726 polypeptide=Lus10030648 locus=Lus10030648.g ID=Lus10030648.BGIv1.0 annot-version=v1.0 MILPNYVVLMSTENHQYLRCSYSTEGTEYLTAEMDFSSSKGLLRFTGGDATAPHATFEVTPATSRTAPEDSFHLKCMLNNKYVVGVRYRARSRAVIVTLF CAAGDAMLEDQSNPNCTLFRAVNGNGNRHGHGEMAQFQHLYGRRFVGFSTWNGVPLLTNVTGRQRGDDVWVCDWEAMPMAMVESANYRDFEVRLPRYVAI KSRLNGKYLRYVNQPGTKYHGYVHLSSTTTSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10030648 [exp]	0	1
AT3G18670			Ankyrin repeat family protein ...		Lus10014030 [exp]	2.8	0.8394
AT5G59340	HD	WOX2	WUSCHEL related homeobox 2 (.1...		Lus10016569 [exp]	3.6	0.8481
AT1G15190			Fasciclin-like arabinogalactan...		Lus10003958 [exp]	20.0	0.8236
					Lus10016424 [exp]	20.6	0.8196
AT3G18670			Ankyrin repeat family protein ...		Lus10019888 [exp]	20.9	0.7852
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Lus10012009 [exp]	40.3	0.8029
AT1G68290		ENDO2 ,ENDO 2	endonuclease 2 (.1)		Lus10041437 [exp]	48.9	0.7546
AT3G16150		ASPGB1	asparaginase B1, N-terminal nu...		Lus10024795 [exp]	56.3	0.7845
AT3G52460			hydroxyproline-rich glycoprote...		Lus10004193 [exp]	56.5	0.7977
					Lus10027563 [exp]	63.3	0.7753

Compare expression of checked genes

Lus10030648 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.