Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15510 328 / 2e-107 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT3G01015 318 / 9e-104 TPX2 (targeting protein for Xklp2) protein family (.1) AT5G37478 71 / 3e-14 TPX2 (targeting protein for Xklp2) protein family (.1) AT1G03780 65 / 7e-11 AtTPX2, TPX2 targeting protein for XKLP2 (.1.2.3) AT5G44270 46 / 3e-05 TPX2 (targeting protein for Xklp2) protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030836 [exp] 697 / 0 AT3G01015 413 / 8e-141 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10010706 [exp] 428 / 1e-146 AT5G15510 476 / 2e-165 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10029190 [exp] 347 / 2e-114 AT5G15510 365 / 2e-121 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10007382 [exp] 64 / 2e-11 AT5G37478 149 / 1e-45 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10020800 [exp] 63 / 2e-11 AT5G37478 148 / 1e-45 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10018608 [exp] 63 / 3e-10 AT1G03780 741 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10017715 [exp] 61 / 1e-09 AT1G03780 687 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10039844 [exp] 59 / 7e-09 AT1G03780 689 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10033674 [exp] 43 / 0.0006 AT1G03780 718 / 0.0 targeting protein for XKLP2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G092100 [exp] 368 / 1e-122 AT5G15510 403 / 5e-136 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.004G118700 [exp] 352 / 3e-116 AT5G15510 410 / 8e-139 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.017G144061 [exp] 73 / 8e-15 AT5G37478 154 / 5e-48 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.017G013100 [exp] 72 / 4e-13 AT1G03780 667 / 0.0 targeting protein for XKLP2 (.1.2.3) Potri.007G138600 [exp] 59 / 4e-09 AT1G03780 672 / 0.0 targeting protein for XKLP2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06886 [flax] [poplar] TPX2 Targeting protein for Xklp2 (TPX2) domain
Representative CDS sequence Show only first row Show all	>Lus10030650 pacid=23140758 polypeptide=Lus10030650 locus=Lus10030650.g ID=Lus10030650.BGIv1.0 annot-version=v1.0 ATGGAGTCCAGCGTCAAGAAGAACAGGAAACCAACCACTCCGGCGAAGGAACCACCATTGCGATTGCCCCATGGGTTCCAATCCAAGGTTTCGGAGAATT CCGATCCGAACGTCTCCCGCTCAAGTCCAATCGTGGATTATTCCAAATCTGGGGGCAGCAAGTCTAAGAGGCCATCGGGAGCGAAAATCCCCAATTCAAG TCAAACCCTGGCTCTGTACTCGCCCAGGAACAAGCTCAAGGACCGGAAGTTTGTGGTGGCGAAGAAGAAGGATAAGTCGAGGGATAAGAAGAAGGTTTGC GATTCCGATTCTTCGGCTGCGAGTGCGATTCATGTAGCGTATGAGAGTCTGAGGGCTTCGCAGGAGGGGTTTTTCAAGGCGGGAAATGACTGCTGCGGAG GAGAATTGGACGAAGGTGATATTGGCGTGGAAGAGGAGGATCCGATTGCGGATGGCGAGAGTAATGGGAAGCAAGGAAGCTCGACGGTTAAGAGGAGGAG GGAGAAGTTTCTTGAAGAAGCGAGGAAGAGTGTTCCAGAGTGTGGGAAAGTGATGCATTTGGTTAAGGCGTTTGAGCAGCTTTTGACTGTTCCGAAAGCA TCGAAGGAGGAGGAGGAGGAAGAGGAGGAGGAGAAGAAGGTGATTCAATGGGCATTGCCCGGAATGCAGCCTTCCAAGAAAGAAGGAGGTGAGATTCAGG AATCTATGGCTTCTATTTGTCCGTCTGATCTGTTCTTGAATTCGGAGAATCTGGGATTGGATTCGAGGCTTTCGATATCTTCTTCGTGGGACGGCAGTCA TGGCGGACGGCAGTCACGGGAGAACTTTGAGTTCATTTTGGTTGATTCGTATATATCCATTTTGTTCCAGAGCTTTGAATCTTGTTCGACTATGGGTGGA GGGAATAGATTGAAGAAAAAGCAGCAGCCAAGAGTCACCAGTCAAAAGCCTTTTAAACTGAAGACAGAGCAAAGGGGGAAAATGAAGGAGGAGGAATTCG TGAAGAAGGTTCATGAAATGATGACAGTAGAGGAGAGGCAGCGCATTCCGGTTGCTCAAGGTCTTCCATGGACAACTGATGAGCCTCAGCACCTTGTTAA ACCACCAGTGAAGGAGGCCACATCGCCAATCGATCTGATGCTTCACAGTGATGTACGTGCAGTAGAGCGTGCTGAATTTGACAGCCAGGTAGCGGAGAAG CTGACTCTGATTGAGGAGTACAAGATGGAAAGAGAGAGGCTGCAAAAGCTGGCTGAGGAGGAGGAATTACGAAGACTGAAAAAGGAACTCGTTCCGAAAG CACAGCCAATGCCTTACTTTGACAGACCATTCATGCCCAGAAGGTCAATGAGGCAACCAACGGTCCCGAAAGAACCAAAATTCCGCTTACCTCACCATAA GAAGATCAAGAGCGGCGGCGCATCCTGGAATGAACACCAGTGA
AA sequence Show only first row Show all	>Lus10030650 pacid=23140758 polypeptide=Lus10030650 locus=Lus10030650.g ID=Lus10030650.BGIv1.0 annot-version=v1.0 MESSVKKNRKPTTPAKEPPLRLPHGFQSKVSENSDPNVSRSSPIVDYSKSGGSKSKRPSGAKIPNSSQTLALYSPRNKLKDRKFVVAKKKDKSRDKKKVC DSDSSAASAIHVAYESLRASQEGFFKAGNDCCGGELDEGDIGVEEEDPIADGESNGKQGSSTVKRRREKFLEEARKSVPECGKVMHLVKAFEQLLTVPKA SKEEEEEEEEEKKVIQWALPGMQPSKKEGGEIQESMASICPSDLFLNSENLGLDSRLSISSSWDGSHGGRQSRENFEFILVDSYISILFQSFESCSTMGG GNRLKKKQQPRVTSQKPFKLKTEQRGKMKEEEFVKKVHEMMTVEERQRIPVAQGLPWTTDEPQHLVKPPVKEATSPIDLMLHSDVRAVERAEFDSQVAEK LTLIEEYKMERERLQKLAEEEELRRLKKELVPKAQPMPYFDRPFMPRRSMRQPTVPKEPKFRLPHHKKIKSGGASWNEHQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15510			TPX2 (targeting protein for Xk...		Lus10030650 [exp]	0	1
AT5G18700		RUK, EMB3013	RUNKEL, EMBRYO DEFECTIVE 3013,...		Lus10033979 [exp]	1.7	0.9713
AT1G04030			unknown protein		Lus10008231 [exp]	5.7	0.9555
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Lus10019720 [exp]	5.8	0.9664
AT3G52110			unknown protein		Lus10039611 [exp]	7.5	0.9565
AT1G69770		CMT3	chromomethylase 3 (.1)		Lus10026024 [exp]	7.7	0.9607
AT3G19050		POK2	phragmoplast orienting kinesin...		Lus10027933 [exp]	7.9	0.9544
AT5G48310			unknown protein		Lus10016071 [exp]	8.5	0.9575
AT5G04885			Glycosyl hydrolase family prot...		Lus10033393 [exp]	8.8	0.9473
AT2G22610			Di-glucose binding protein wit...		Lus10025708 [exp]	8.8	0.9654
AT1G63640			P-loop nucleoside triphosphate...		Lus10002007 [exp]	8.9	0.9444

Compare expression of checked genes

Lus10030650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.