Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60010 152 / 2e-47 unknown protein AT1G10530 134 / 1e-40 unknown protein AT5G50090 119 / 1e-34 unknown protein AT5G62900 105 / 2e-29 unknown protein AT5G67620 92 / 1e-23 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030835 [exp] 233 / 4e-80 AT1G60010 150 / 2e-47 unknown protein Lus10029193 [exp] 219 / 1e-73 AT1G60010 178 / 1e-57 unknown protein Lus10010708 [exp] 216 / 9e-73 AT1G60010 177 / 3e-57 unknown protein Lus10004229 [exp] 119 / 3e-34 AT5G50090 150 / 1e-46 unknown protein Lus10043461 [exp] 115 / 1e-32 AT5G50090 146 / 7e-45 unknown protein Lus10034124 [exp] 111 / 5e-31 AT5G50090 147 / 3e-45 unknown protein Lus10042139 [exp] 108 / 3e-30 AT5G50090 141 / 4e-43 unknown protein Lus10019264 [exp] 84 / 2e-20 AT5G67620 163 / 5e-51 unknown protein Lus10026474 [exp] 56 / 7e-11 ND 47 / 1e-07
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G095400 [exp] 166 / 8e-53 AT1G60010 187 / 5e-61 unknown protein Potri.008G146500 [exp] 167 / 1e-52 AT1G60010 189 / 3e-61 unknown protein Potri.015G072501 [exp] 141 / 6e-43 AT5G50090 152 / 4e-47 unknown protein Potri.012G077300 [exp] 139 / 4e-42 AT5G50090 168 / 1e-53 unknown protein Potri.007G005600 [exp] 105 / 7e-29 AT5G67620 184 / 7e-60 unknown protein Potri.008G186700 [exp] 40 / 0.0002 AT5G50090 41 / 1e-04 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030651 pacid=23140659 polypeptide=Lus10030651 locus=Lus10030651.g ID=Lus10030651.BGIv1.0 annot-version=v1.0 ATGGGGAATTGCCAAGCAATTGATGCGGCGGCGCTGGTGATTCAGCATCCATGTGGGAAGATTGAGAGGATGTACTGGCCTGTACTCGCCAGCGAAATCA TGACCCTCAACCCTGGTCATTACGTTTCTCTCATCATCCCACTTCCTTCTTCCGATTCTTCTTTGCCGGCCGATCAGAATCTGCAGCCGGCGGCGGTTCA GTTCACTCGAGTTAAGCTTCTCAGGCCTACTCATACTCTGGCTCTTGGCCATGCCTACCGCCTTGTTCCTACTCAAGAGGTGGTGAGAGTTTTGCGGGCG AAGAAGTATGCCAAGATGAAGAAACAGCTGCAGGAGGCAGAGCCAGTTGAGGATTCAGAGATATCTGGTTCAGATGAGAGTTTTCAGTTCCAGGCAACTA AACAAGTTGGCAGACACCGGCGACGAGCAGCACCGGTCAACCCTATTGTAATGAGGTCAAAGTCATGGCGGCCAACACTACAAAGCATCACAGAGACCAA CAGCTGA
AA sequence Show only first row Show all	>Lus10030651 pacid=23140659 polypeptide=Lus10030651 locus=Lus10030651.g ID=Lus10030651.BGIv1.0 annot-version=v1.0 MGNCQAIDAAALVIQHPCGKIERMYWPVLASEIMTLNPGHYVSLIIPLPSSDSSLPADQNLQPAAVQFTRVKLLRPTHTLALGHAYRLVPTQEVVRVLRA KKYAKMKKQLQEAEPVEDSEISGSDESFQFQATKQVGRHRRRAAPVNPIVMRSKSWRPTLQSITETNS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60010			unknown protein		Lus10030651 [exp]	0	1
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10035868 [exp]	8.7	0.8024
AT2G39210			Major facilitator superfamily ...		Lus10037948 [exp]	9.7	0.7618
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10012912 [exp]	10.1	0.8040
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10040284 [exp]	10.2	0.8154
AT1G57790			F-box family protein (.1)		Lus10014208 [exp]	14.4	0.8057
AT5G23810		AAP7	amino acid permease 7 (.1.2)		Lus10008352 [exp]	15.9	0.8026
AT2G02980		OTP85	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10021667 [exp]	18.2	0.8296
AT3G61610			Galactose mutarotase-like supe...		Lus10005147 [exp]	21.7	0.8379
AT3G07870			F-box and associated interacti...		Lus10006403 [exp]	23.9	0.8106
AT3G61610			Galactose mutarotase-like supe...		Lus10003035 [exp]	29.6	0.8326

Compare expression of checked genes

Lus10030651 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.