Plant FIBer expression Database

Lus10030652 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G10522 63 / 4e-13 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030834
[exp]
118 / 1e-34 AT1G10522 125 / 7e-37 unknown protein
Lus10030655
[exp]
61 / 4e-12 AT1G10522 170 / 3e-54 unknown protein
Lus10030830
[exp]
62 / 6e-12 AT2G28230 305 / 4e-103 TATA-binding related factor (TRF) of subunit 20 of Mediator complex (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G094900
[exp]
66 / 5e-14 AT1G10522 196 / 1e-64 unknown protein
PFAM info
Representative CDS sequence
>Lus10030652 pacid=23140782 polypeptide=Lus10030652 locus=Lus10030652.g ID=Lus10030652.BGIv1.0 annot-version=v1.0
ATGGCGGTTCCGTACACCGGCTATCTCCACTCTCTTCCACCTCATCCACTCCCCTTCTCTCCCGCCAAATCTCCACTCTTCTCAACTTTCAGCACTCCTA
ATCGCCACTTCATTTCTCATCTCCCCCCTCCGGCGTCCGTTTTACTCCAGCATCCAGCTCCAGAGACGTCGCCGGAGCCTCCGTGCCGCCCCAGAACATC
ATTCAGTTGCTTCTTGCACAAGGAGTATGGAGGGCCTGGAACGTTAATGGTGGAGCCATTTACAGATTTGTTTCTAGCTCTCAAGGAGAAAAAATTGCCT
GGAGCACCTTTTGCAGCTAGAACAGCACTTTTGTGGGCTCAAATCATGTCGATCAGGATTGGCAAGTTTGGCACTCAGACATGCCTCTTCGTTAAGGTTT
TTTAA
AA sequence
>Lus10030652 pacid=23140782 polypeptide=Lus10030652 locus=Lus10030652.g ID=Lus10030652.BGIv1.0 annot-version=v1.0
MAVPYTGYLHSLPPHPLPFSPAKSPLFSTFSTPNRHFISHLPPPASVLLQHPAPETSPEPPCRPRTSFSCFLHKEYGGPGTLMVEPFTDLFLALKEKKLP
GAPFAARTALLWAQIMSIRIGKFGTQTCLFVKVF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G10522 unknown protein Lus10030652
[exp]
0 1
AT1G06980 unknown protein Lus10020386
[exp]
9.4 0.7346
AT3G22880 ARLIM15, ATDMC1 ARABIDOPSIS THALIANA DISRUPTIO... Lus10006625
[exp]
16.0 0.6832
AT1G59970 Matrixin family protein (.1) Lus10041294
[exp]
20.4 0.6328
AT3G07020 UGT80A2, SGT UDP-glucosyl transferase 80A2,... Lus10020381
[exp]
27.7 0.6656
AT1G09790 COBL6 COBRA-like protein 6 precursor... Lus10016187
[exp]
31.5 0.6728
AT2G18960 OST2, PMA, AHA1 PLASMA MEMBRANE PROTON ATPASE,... Lus10028202
[exp]
34.2 0.6354
AT1G03220 Eukaryotic aspartyl protease f... Lus10041226
[exp]
41.5 0.6632
AT1G79800 AtENODL7 early nodulin-like protein 7 (... Lus10024846
[exp]
43.7 0.5916
Lus10004033
[exp]
64.6 0.5771
AT5G14230 unknown protein Lus10022339
[exp]
70.4 0.6152

Lus10030652 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.