Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24095 200 / 1e-65 Putative thiol-disulphide oxidoreductase DCC (.1) AT1G52590 70 / 2e-15 Putative thiol-disulphide oxidoreductase DCC (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030833 [exp] 248 / 2e-84 AT1G24095 253 / 7e-86 Putative thiol-disulphide oxidoreductase DCC (.1) Lus10036091 [exp] 75 / 4e-17 AT1G52590 232 / 8e-79 Putative thiol-disulphide oxidoreductase DCC (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G147000 [exp] 206 / 4e-68 AT1G24095 216 / 3e-71 Putative thiol-disulphide oxidoreductase DCC (.1) Potri.008G213200 [exp] 66 / 9e-14 AT1G52590 222 / 5e-75 Putative thiol-disulphide oxidoreductase DCC (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04134 [flax] [poplar] DUF393 Protein of unknown function, DUF393
Representative CDS sequence Show only first row Show all	>Lus10030653 pacid=23140610 polypeptide=Lus10030653 locus=Lus10030653.g ID=Lus10030653.BGIv1.0 annot-version=v1.0 ATGATGGCCAGAATGTTGCTGAGGCGGCTCCGCTGCATCTCCTCACTTCCACACCCGCCCCTGAAGAAGCTATCCCAATTCTCCTCGTCGTTTTCTACTT CTCTGCTCAATCAACCCATCGTGGTTTACGACGGCGTATGCCATCTCTGCCACGGAGAGGTGAAGTGGATAATTCAAGTGGACAAGCACAAGAAGATCAA ATTCTGCTGTCTTCAGTCTCAAGCAGCTGAACCATACCTGAGGTTATGTGGTCTTGAGAGAGAAGATGTCCTTCGTCGATTTCTTTTCGTGGAAGGGCCA GGTCAATACCACCAGGCATCCACTGCTGCTCTGAAAGTGCTATCCTACCTGCCTCTCCCATACTCTGCTTTGAGTTCGCTCATGGTTGTCCCGACTCCGA TCAGAGATGCAGTGTACGACCATGTGGCCAAGCGACGCTACGACTGGTTCGGGAAGGCAGATCGTTGCTTGGTGTTGGATGACAAAGAGTTGCTGGACCG ATTCATCGACAAGGATGAAATGCTGGACGAGTAG
AA sequence Show only first row Show all	>Lus10030653 pacid=23140610 polypeptide=Lus10030653 locus=Lus10030653.g ID=Lus10030653.BGIv1.0 annot-version=v1.0 MMARMLLRRLRCISSLPHPPLKKLSQFSSSFSTSLLNQPIVVYDGVCHLCHGEVKWIIQVDKHKKIKFCCLQSQAAEPYLRLCGLEREDVLRRFLFVEGP GQYHQASTAALKVLSYLPLPYSALSSLMVVPTPIRDAVYDHVAKRRYDWFGKADRCLVLDDKELLDRFIDKDEMLDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24095			Putative thiol-disulphide oxid...		Lus10030653 [exp]	0	1
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10019772 [exp]	1.0	0.7532
AT5G62070		IQD23	IQ-domain 23 (.1)		Lus10027435 [exp]	19.1	0.5950
AT3G55140			Pectin lyase-like superfamily ...		Lus10003307 [exp]	25.6	0.6466
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Lus10008764 [exp]	27.7	0.6036
AT2G45460	FHA		SMAD/FHA domain-containing pro...		Lus10009303 [exp]	33.0	0.6454
AT2G48060			unknown protein		Lus10035352 [exp]	40.9	0.5967
AT5G66400		ATDI8, RAB18	RESPONSIVE TO ABA 18, ARABIDOP...		Lus10041969 [exp]	48.1	0.5233
AT1G67680			SRP72 RNA-binding domain (.1)		Lus10036924 [exp]	48.3	0.5990
AT4G30360		ATCNGC17	cyclic nucleotide-gated channe...		Lus10008900 [exp]	58.5	0.5967
AT1G60430		ARPC3	actin-related protein C3 (.1.2...		Lus10029603 [exp]	74.5	0.5764

Compare expression of checked genes

Lus10030653 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.