Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28230 234 / 3e-79 TATA-binding related factor (TRF) of subunit 20 of Mediator complex (.1) AT4G09070 221 / 7e-74 TATA-binding related factor (TRF) of subunit 20 of Mediator complex (.1) AT2G28020 67 / 2e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030830 [exp] 338 / 3e-117 AT2G28230 305 / 4e-103 TATA-binding related factor (TRF) of subunit 20 of Mediator complex (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G143400 [exp] 261 / 1e-89 AT2G28230 356 / 3e-126 TATA-binding related factor (TRF) of subunit 20 of Mediator complex (.1) Potri.005G126902 [exp] 84 / 6e-22 AT2G28230 87 / 9e-23 TATA-binding related factor (TRF) of subunit 20 of Mediator complex (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0273 [flax] [poplar] CYTH PF08612 [flax] [poplar] Med20 TATA-binding related factor (TRF) of subunit 20 of Mediator complex
Representative CDS sequence Show only first row Show all	>Lus10030654 pacid=23140644 polypeptide=Lus10030654 locus=Lus10030654.g ID=Lus10030654.BGIv1.0 annot-version=v1.0 ATGCTACGAGACCAGAGCCTAGCGTGCGAATACCCTCGTGAACTATTGGGGGTTTCGCTGCAGGAGCAGCCCAACAAGTACTACTTCATAATCAGAGGTC AGAGGCTGGTAACCGAGGCTGATTCTTCCATCCAGACTATCATGGAGAAGCTTCAGTCCTACAAATCCCGAATTGCGCTTTACTTCGAGGGGTTGCAGTA CCAACTTGGTGATTTTCAGTTGAGAGTCGGGAAGGTTGTCCCCAGTAACTCTGAGAGCTTGAGGGGAATAGTTCTCGAGGTGGAGTATCTTCCGGTATCT TCAATGGAGAAGGCCAGTCAATTACTAGCTGATTTCGTTGATATATTGCACGAAGCTATTGTGAAACGATCGCTGCATGGAAGCTTTTTGCACAATGAAC CCAATTTGTTGGAGTATGGTCTAGGAGATGAGTATACATCACAACACACAGCTGTGCTGTACGCCAGTGTGATGGCACAATTGATTGCATCTCAGCCGAT GAGGAACTAG
AA sequence Show only first row Show all	>Lus10030654 pacid=23140644 polypeptide=Lus10030654 locus=Lus10030654.g ID=Lus10030654.BGIv1.0 annot-version=v1.0 MLRDQSLACEYPRELLGVSLQEQPNKYYFIIRGQRLVTEADSSIQTIMEKLQSYKSRIALYFEGLQYQLGDFQLRVGKVVPSNSESLRGIVLEVEYLPVS SMEKASQLLADFVDILHEAIVKRSLHGSFLHNEPNLLEYGLGDEYTSQHTAVLYASVMAQLIASQPMRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28230			TATA-binding related factor (T...		Lus10030654 [exp]	0	1
AT1G06980			unknown protein		Lus10006211 [exp]	1.0	0.9126
AT3G09860			unknown protein		Lus10001400 [exp]	1.4	0.9100
AT4G15950		RDM2, NRPE4, NR...	RNA-DIRECTED DNA METHYLATION 2...		Lus10038766 [exp]	1.7	0.9088
AT5G09250		KIWI	ssDNA-binding transcriptional ...		Lus10013733 [exp]	2.0	0.9052
AT2G28230			TATA-binding related factor (T...		Lus10030830 [exp]	2.2	0.9000
AT2G41530		ATSFGH	ARABIDOPSIS THALIANA S-FORMYLG...		Lus10042038 [exp]	2.4	0.8962
AT5G05670			signal recognition particle bi...		Lus10013031 [exp]	6.7	0.8862
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Lus10031004 [exp]	8.9	0.8571
AT5G65880			unknown protein		Lus10039652 [exp]	10.2	0.8665
AT5G18100		CSD3	copper/zinc superoxide dismuta...		Lus10010651 [exp]	11.0	0.8777

Compare expression of checked genes

Lus10030654 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.