Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10520 736 / 0 AtPol{lambda} DNA polymerase {lambda}, DNA polymerase lambda (POLL) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030831 [exp] 920 / 0 AT1G10520 704 / 0.0 DNA polymerase {lambda}, DNA polymerase lambda (POLL) (.1) Lus10007325 [exp] 251 / 8e-82 AT1G10520 234 / 2e-75 DNA polymerase {lambda}, DNA polymerase lambda (POLL) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G094800 [exp] 739 / 0 AT1G10520 724 / 0.0 DNA polymerase {lambda}, DNA polymerase lambda (POLL) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0198 [flax] [poplar] HHH PF10391 [flax] [poplar] DNA_pol_lambd_f Fingers domain of DNA polymerase lambda
Representative CDS sequence Show only first row Show all	>Lus10030656 pacid=23140674 polypeptide=Lus10030656 locus=Lus10030656.g ID=Lus10030656.BGIv1.0 annot-version=v1.0 ATGGCGCCAAGGGCAACCAAAAGCAAAGCCCTTTCGATCGACCCAGATGGGATGTTCGCCGGAATGGTTGTGTTCTTGATTGACAATGAAGTCCAACCCC GCCGGCTAGAGATTTGGAGGCAGAAGCTGATGCAAATGGGAGCAACAATCGAGGACCGCTTCTCCAAGAAGGTCAATTTCATTTTCGCCACGAGTTTAGA AGCGCTCCTGAAGCAAGTGGATACACGTCGCCTTGAACGCTTCAAAGGAAGAGCTCTCCTCTACCGGTGGATTGAAGAGAGTTTGAGATTAGGGGAAAAG GTTTCGGAGGATTCATACTGCATAGATTTTAACTCACAAAGAAGCAAGAGTAGTAGAAATGGTGATGATGAGTCTTCTCCTCTGAAGAAGGTGAGATGTG ATGATCCTCCTGATATTGTGGAGAGTTTCAAAGCAGATAGCAAGTCAGATTCTGATAGCTTGAATGAATCTCTTAGTCCTGGAAGGACTAGCCCGAAGAG TGTCAGTAGCTCGAATACCGATTTGTCGGTGGAGTATAATCCACCTGATTTGAATAGAAACATCACTGAGATTTTCGGGAAGCTTATCAATATCTATCGG GCATTGGGTGAGGACCGGAGGTCGTTCAGCTATTACAAGGCGATCCCAGTTATTGAGAAGTTACCGTTCAAAATCGAGAGTGCAGAACAGGTGAAAGGTC TGCCTGGGATTGGGAAGTCGTTGCAGGACCATATCCAAGAGATAGTGACTACTAGCAAATTATCCAAGTTGGAGCACTTTGAAACGGATGAAAAGGTGCG TGCCATTACTTTGTTTGGAGAAGTGTGGGGTGTTGGTCCAGCTACTGCCCTGAAGTTATACGAGAAAGGACACCGCACATTAGATGATCTGAAGAACGAT GATTCCTTAACTAACTCACAGAAGATAGGGCTGAAATACTTCGATGACATTAGGACAAGGATTCCACGCAGCGAGGTTCAAGAAATGGAACTACTACTGC AGAAAACTGGAGAAGAAATTTTGCCAGGGGTACTTATTATATGTGGAGGATCGTATAGACGCGGGAAATCATCGTGTGGGGACATGGATATTGTAGTTAC TCACCCTGACGGGACAAGCCATAAAGGGTTTTTGTCGAAATTCGTGAAACAACTCAAGGAAATGGAATTCTTAAGAGAAGATTTAGTTTTCAGCACCCAC AGCGAGCAGGGTACTGATTCTGGAGTTGACACATATTTCGGTCTTTGTACATATCCTGGACAAGAACTGCGACGCCGGATAGATTTCAAGGTATATCCGA GGGACATATATGCTTTCGGTCTCATAGCATGGACTGGGAATGATACACTCAACAGAAGGCTGAGGCTGCTAGCAGAGTCCAAAGGCTTCCGGCTAGATGA CACCGGTCTATTCCCAGCAACTCACTCTTCAAGTGGCAAACGGGGTTCGAGGGCGAGTGTGAGCTTAAAACTGCAGACGGAGAAGGAAGTGTTTGAGTTC TTGGGGTTTCCATGGCTTGAACCTCACGAAAGGAACTTGTGA
AA sequence Show only first row Show all	>Lus10030656 pacid=23140674 polypeptide=Lus10030656 locus=Lus10030656.g ID=Lus10030656.BGIv1.0 annot-version=v1.0 MAPRATKSKALSIDPDGMFAGMVVFLIDNEVQPRRLEIWRQKLMQMGATIEDRFSKKVNFIFATSLEALLKQVDTRRLERFKGRALLYRWIEESLRLGEK VSEDSYCIDFNSQRSKSSRNGDDESSPLKKVRCDDPPDIVESFKADSKSDSDSLNESLSPGRTSPKSVSSSNTDLSVEYNPPDLNRNITEIFGKLINIYR ALGEDRRSFSYYKAIPVIEKLPFKIESAEQVKGLPGIGKSLQDHIQEIVTTSKLSKLEHFETDEKVRAITLFGEVWGVGPATALKLYEKGHRTLDDLKND DSLTNSQKIGLKYFDDIRTRIPRSEVQEMELLLQKTGEEILPGVLIICGGSYRRGKSSCGDMDIVVTHPDGTSHKGFLSKFVKQLKEMEFLREDLVFSTH SEQGTDSGVDTYFGLCTYPGQELRRRIDFKVYPRDIYAFGLIAWTGNDTLNRRLRLLAESKGFRLDDTGLFPATHSSSGKRGSRASVSLKLQTEKEVFEF LGFPWLEPHERNL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10520		AtPol{lambda}	DNA polymerase {lambda}, DNA p...		Lus10030656 [exp]	0	1
AT5G50340			ATP-dependent peptidases;nucle...		Lus10025843 [exp]	2.0	0.8686
AT5G02520			unknown protein		Lus10025814 [exp]	6.9	0.8701
AT3G15150		HPY2, ATMMS21	HIGH PLOIDY2, A. THALIANA METH...		Lus10015968 [exp]	10.4	0.8684
AT1G27170			transmembrane receptors;ATP bi...		Lus10015453 [exp]	15.3	0.7893
					Lus10005797 [exp]	15.3	0.8504
AT1G09850		XBCP3	xylem bark cysteine peptidase ...		Lus10024296 [exp]	15.7	0.8027
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Lus10009823 [exp]	17.1	0.8322
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10028781 [exp]	20.0	0.7830
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10006370 [exp]	20.0	0.8525
AT1G78780			pathogenesis-related family pr...		Lus10035732 [exp]	21.1	0.7710

Compare expression of checked genes

Lus10030656 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.