Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43250 139 / 2e-43 CCAAT NF-YC13 "nuclear factor Y, subunit C13", nuclear factor Y, subunit C13 (.1) AT3G12480 57 / 2e-10 CCAAT NF-YC11 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) AT1G54830 57 / 3e-10 CCAAT NF-YC3 "nuclear factor Y, subunit C3", nuclear factor Y, subunit C3 (.1.2.3) AT5G63470 57 / 3e-10 CCAAT NF-YC4 "nuclear factor Y, subunit C4", nuclear factor Y, subunit C4 (.1.2) AT1G07980 56 / 5e-10 CCAAT NF-YC10 "nuclear factor Y, subunit C10", nuclear factor Y, subunit C10 (.1) AT3G48590 56 / 6e-10 CCAAT NF-YC1, ATHAP5A, HAP5A "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) AT1G08970 56 / 8e-10 CCAAT NF-YC9, HAP5C "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) AT5G50480 52 / 1e-08 CCAAT NF-YC6 "nuclear factor Y, subunit C6", nuclear factor Y, subunit C6 (.1) AT1G56170 49 / 9e-08 CCAAT NF-YC2, ATHAP5B, HAP5B "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) AT5G27910 47 / 8e-07 CCAAT NF-YC8 "nuclear factor Y, subunit C8", nuclear factor Y, subunit C8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030832 [exp] 234 / 3e-80 AT5G43250 147 / 3e-46 "nuclear factor Y, subunit C13", nuclear factor Y, subunit C13 (.1) Lus10006169 [exp] 98 / 5e-26 AT1G22380 172 / 3e-51 UDP-glucosyl transferase 85A3 (.1) Lus10016750 [exp] 54 / 5e-09 AT3G48590 298 / 1e-102 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Lus10022444 [exp] 53 / 8e-09 AT3G48590 300 / 1e-102 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Lus10026780 [exp] 52 / 3e-08 AT5G19490 189 / 1e-58 Histone superfamily protein (.1) Lus10021934 [exp] 51 / 3e-08 AT1G08970 250 / 5e-84 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Lus10041221 [exp] 51 / 3e-08 AT1G08970 248 / 2e-83 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Lus10004468 [exp] 50 / 6e-08 AT1G08970 249 / 2e-83 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Lus10029939 [exp] 50 / 6e-08 AT1G08970 243 / 3e-81 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G055000 [exp] 157 / 3e-50 AT5G43250 145 / 1e-45 "nuclear factor Y, subunit C13", nuclear factor Y, subunit C13 (.1) Potri.015G097400 [exp] 56 / 5e-10 AT3G48590 314 / 3e-109 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Potri.013G025000 [exp] 54 / 2e-09 AT1G08970 252 / 6e-85 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Potri.012G098500 [exp] 53 / 7e-09 AT3G48590 265 / 4e-90 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Potri.008G203500 [exp] 53 / 9e-09 AT1G08970 241 / 2e-80 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Potri.010G032301 [exp] 52 / 1e-08 AT1G08970 237 / 1e-78 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Potri.005G094900 [exp] 52 / 1e-08 AT1G56170 242 / 5e-81 "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) Potri.007G070900 [exp] 52 / 2e-08 AT1G56170 235 / 3e-78 "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) Potri.001G033200 [exp] 51 / 3e-08 AT3G12480 221 / 7e-71 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) Potri.005G035800 [exp] 51 / 3e-08 AT1G08970 246 / 5e-82 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF00808 [flax] [poplar] CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Representative CDS sequence Show only first row Show all	>Lus10030657 pacid=23140730 polypeptide=Lus10030657 locus=Lus10030657.g ID=Lus10030657.BGIv1.0 annot-version=v1.0 ATGGCGGAAGAGGAGCAAGTCGAAGAAGTGACAATCCAGCAGCAGGAGTTCCCGAACGGGCGCGTGAGGAAGATCATGAGGATCGACAAGGACGTGAACA AGGTGACCTCGGAAGCTCTGTTCGTCGTCGCGCGCTCCACCGAACTGTTCCTTCGCTTTCTCGCTGAGAAATCGGTCGAAGTGGCGTCGGAGAAGAAGCG GAAGATTGTGAAGATCGAACACCTCCGAGCGGCCGTCCAGAGGCACCAGCCGACCAGCGATTTCCTCCTCGAATCGCTTCCGACGCAGACTCAATCTCAA GAAGAAACCGGCGGTGGTGCTGCGGCTCGCCTTCCTCGCGAAGTTACTCCGAAGCCGATGCCTGCCGGTACTCGGCGGATTGATGATTTCTTTGGTAAAT TTACGAGCAGGGCTTCTACTTCAGCTGAGAATCAAGGTTGA
AA sequence Show only first row Show all	>Lus10030657 pacid=23140730 polypeptide=Lus10030657 locus=Lus10030657.g ID=Lus10030657.BGIv1.0 annot-version=v1.0 MAEEEQVEEVTIQQQEFPNGRVRKIMRIDKDVNKVTSEALFVVARSTELFLRFLAEKSVEVASEKKRKIVKIEHLRAAVQRHQPTSDFLLESLPTQTQSQ EETGGGAAARLPREVTPKPMPAGTRRIDDFFGKFTSRASTSAENQG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43250	CCAAT	NF-YC13	"nuclear factor Y, subunit C13...		Lus10030657 [exp]	0	1
AT4G28310			unknown protein		Lus10018597 [exp]	1.7	0.9412
AT5G23420		HMGB6	high-mobility group box 6 (.1....		Lus10013453 [exp]	4.9	0.9335
AT3G02820			zinc knuckle (CCHC-type) famil...		Lus10030564 [exp]	4.9	0.9323
AT5G52220			unknown protein		Lus10038870 [exp]	8.1	0.9049
AT1G50240		FU	FUSED, Protein kinase family p...		Lus10039168 [exp]	8.5	0.9290
AT4G18590			Nucleic acid-binding, OB-fold-...		Lus10014209 [exp]	9.5	0.9032
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10019248 [exp]	13.4	0.9093
AT5G42330			unknown protein		Lus10013229 [exp]	14.1	0.9242
AT3G12170			Chaperone DnaJ-domain superfam...		Lus10042353 [exp]	15.2	0.8905
AT5G43250	CCAAT	NF-YC13	"nuclear factor Y, subunit C13...		Lus10030832 [exp]	16.2	0.8918

Compare expression of checked genes

Lus10030657 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.