Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10510 726 / 0 EMB2004 embryo defective 2004, RNI-like superfamily protein (.1) AT3G63130 100 / 6e-22 ATRANGAP1, RANGAP1 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) AT5G19320 94 / 4e-20 RANGAP2 RAN GTPase activating protein 2 (.1) AT3G06000 52 / 3e-07 RNI-like superfamily protein (.1) AT1G15740 43 / 0.0008 Leucine-rich repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030829 [exp] 1088 / 0 AT1G10510 747 / 0.0 embryo defective 2004, RNI-like superfamily protein (.1) Lus10006930 [exp] 96 / 1e-20 AT3G63130 712 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) Lus10034066 [exp] 91 / 4e-19 AT5G19320 669 / 0.0 RAN GTPase activating protein 2 (.1) Lus10010523 [exp] 91 / 4e-19 AT5G19320 666 / 0.0 RAN GTPase activating protein 2 (.1) Lus10014670 [exp] 91 / 8e-19 AT3G63130 717 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) Lus10034013 [exp] 43 / 0.0008 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G193700 [exp] 814 / 0 AT1G10510 813 / 0.0 embryo defective 2004, RNI-like superfamily protein (.1) Potri.002G052900 [exp] 105 / 1e-23 AT3G63130 664 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) Potri.005G209600 [exp] 100 / 4e-22 AT3G63130 667 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) Potri.010G091100 [exp] 96 / 1e-20 AT5G19320 646 / 0.0 RAN GTPase activating protein 2 (.1) Potri.001G361200 [exp] 54 / 2e-07 AT5G55540 1900 / 0.0 LOPPED 1, tornado 1 (.1) Potri.007G110800 [exp] 43 / 0.001 AT3G18730 1310 / 0.0 TONSOKU, MGOUN3, BRUSHY1, tetratricopeptide repeat (TPR)-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030658 pacid=23140650 polypeptide=Lus10030658 locus=Lus10030658.g ID=Lus10030658.BGIv1.0 annot-version=v1.0 ATGAGTTCTTCTTCCACTCTCTCCCTCTGCTCTCATCCTCAGATTGCTCGCCCTCCGTCCGCGCTGCGCTATCGAGCTCAAGGCGCGCTTCTGTTGTCGT TTTCTTCGGATTCTACTTCGAGAAGAAGATGTTTCAGGTTCAAGCGCTTAGTCGTGAACGCCGCAGCTTCGACGTCCGGTCGTGGCCGGAGAGTCTATAA GCAGTCCCAAAGAGAGAGTTCTTTCGGCGGTGATCCTCCGGTGCATCAGATTGCTTCGTTCGCGCTTCCCGCCGGCGTGGCCCTCGTGGCTAGCATCGTT CTATGGAAATTGGCGGAGAAATTCTTAAAGCCAAAGCCAGGTAACCCTTCAGTGGAGGAAAGGGTTGCAGTGGAGGGAAAGGAAGTTCCTGCCAAGGGAA TGAGTTGGCCTTTTGGTGCTGGATCGAATTTGCTGTCGAGTTTCTCTTCCAATGAGGCCAAGGTGACACTCAATGCATTTGCCAACGAGTTATTAAGATA CGGAAGCGTTGACATGTCAGGGTGTAATTTTGGAGATGAAGGCATGTTCGTCCTTGCTACGAACCTGGCTTACAACAAGACTCTAGAGGAAGTTAGCTTT GCTTCTAATGGAATAACGGCACAAGGGATAAATGCTTTTAAAGGGGTTCTTGAAACGAACGTTTATTTGAAGACTCTGAACCTTTCTGGGAATGCCATTG GAGATGAAGGAACCAAGATCCTATGTGCAATGTTGGCGAACAATACTGGTATTGAAAAGCTCCAGCTGAATAGTGCTGACGTGGGTGATGAGGGTGGACA AGCTATTGCAGACCTGCTGAAGAAAAACTCAATCTTACGCGTGATTGAACTTAACAACAACATGATTGATTATTCTGGATTTACAAGTCTTGCTGGAGCG TTAGCCGAGAACAACACAGTACGAAGTTTGTATCTCAATGGCAATTATGGGGGAACACTTGGTGTTAATGCTTTGGCGAAAGGGCTAGAGGGGAACAAGG CGTTGCAGGAACTTCACTTGCAAGGAAATTCAATTGGTGACGAGGGAGCTCGTGCTCTGATATCAGGGTTGTCGTCCAGTAAAGCAAAGCTCACTCATCT AGACCTCGGCAACAACTCAATAAGCGGAACCGGTGCCTTTCATGTTGCTGAATACATAAAGAAGAGCAAAAGCTTGTTTTGGCTGAACTTGTACATGAAT GACTTGGGAGACGAGGGTGCGGAGGAGATTGCTGCTGGTTTAAAGGAGAACCGGAGTATATCAATCATAGATCTGGGAGGAAATAACATACGGACCAACG GGATCACTGCAATAGCTCGTGTCTTCAAAGATAACTCTGTTATCACGACATTGGAAATGGGTTATAATCCTATCTTACCGGACGGAGCAAAGGCATTATC CGACATTCTCAAGTTTCATGGCAGCATAAAGGTCTTAAAGCTTGGTTGGTGTCAGATAGGTCCCAAAGGCGCAGAACACATTGCAGAAACTCTTAAATAT AACAACACCATCTCGGTGTTGGACTTGAGAGGAAATGGGCTCAAAGACGAAGGTGCAGTCTGCATTGCTCGTAGCTTGAAGGTGGTAAATGAAGTACTGA CCGAACTCGACCTGGGATTCAACGAAATACGAGATGACGGAGCTTTTGCGATAGCTCAAGCACTGAAAGCCAACGAAGACGTGAAGATAGCCTCGATAAA CCTTGCAAACAACTTCCTTACCAAATTCGGCCAGGGCGCGTTGAGTGATGCAAGAGACCATGTGCTTGAGATGAACGAGAAGGAAGTAAACATTGTCTAC TAG
AA sequence Show only first row Show all	>Lus10030658 pacid=23140650 polypeptide=Lus10030658 locus=Lus10030658.g ID=Lus10030658.BGIv1.0 annot-version=v1.0 MSSSSTLSLCSHPQIARPPSALRYRAQGALLLSFSSDSTSRRRCFRFKRLVVNAAASTSGRGRRVYKQSQRESSFGGDPPVHQIASFALPAGVALVASIV LWKLAEKFLKPKPGNPSVEERVAVEGKEVPAKGMSWPFGAGSNLLSSFSSNEAKVTLNAFANELLRYGSVDMSGCNFGDEGMFVLATNLAYNKTLEEVSF ASNGITAQGINAFKGVLETNVYLKTLNLSGNAIGDEGTKILCAMLANNTGIEKLQLNSADVGDEGGQAIADLLKKNSILRVIELNNNMIDYSGFTSLAGA LAENNTVRSLYLNGNYGGTLGVNALAKGLEGNKALQELHLQGNSIGDEGARALISGLSSSKAKLTHLDLGNNSISGTGAFHVAEYIKKSKSLFWLNLYMN DLGDEGAEEIAAGLKENRSISIIDLGGNNIRTNGITAIARVFKDNSVITTLEMGYNPILPDGAKALSDILKFHGSIKVLKLGWCQIGPKGAEHIAETLKY NNTISVLDLRGNGLKDEGAVCIARSLKVVNEVLTELDLGFNEIRDDGAFAIAQALKANEDVKIASINLANNFLTKFGQGALSDARDHVLEMNEKEVNIVY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10510		EMB2004	embryo defective 2004, RNI-lik...		Lus10030658 [exp]	0	1
AT3G09250			Nuclear transport factor 2 (NT...		Lus10021504 [exp]	2.4	0.8790
AT3G09250			Nuclear transport factor 2 (NT...		Lus10022605 [exp]	5.7	0.8472
AT4G27340			Met-10+ like family protein (....		Lus10037871 [exp]	11.0	0.7935
AT1G13270		MAP1B, MAP1C	methionine aminopeptidase 1B (...		Lus10021701 [exp]	12.7	0.8326
AT5G52100		CRR1	chlororespiration reduction 1,...		Lus10005771 [exp]	14.7	0.8117
AT1G32070		ATNSI	nuclear shuttle interacting (....		Lus10003245 [exp]	15.3	0.8215
AT1G22940		THIE, TH-1, TH1	THIAMINEE, THIAMINE REQUIRING ...		Lus10015466 [exp]	16.9	0.8222
AT4G14385			unknown protein		Lus10011821 [exp]	20.8	0.7998
AT1G72640			NAD(P)-binding Rossmann-fold s...		Lus10000373 [exp]	21.4	0.8128
AT1G77122			Uncharacterised protein family...		Lus10028624 [exp]	24.9	0.7057

Compare expression of checked genes

Lus10030658 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.