Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24120 545 / 0 ARL1 ARG1-like 1 (.1) AT1G68370 450 / 5e-157 ARG1 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) AT1G59980 439 / 1e-152 GPS4, ARL2 ,ATDJC39 gravity persistence signal 4, ARG1-like 2 (.1) AT5G03160 71 / 4e-13 ATP58IPK homolog of mamallian P58IPK (.1) AT3G62600 70 / 6e-13 ATERDJ3B DNAJ heat shock family protein (.1) AT5G48030 70 / 1e-12 GFA2 gametophytic factor 2 (.1) AT3G17830 70 / 1e-12 Molecular chaperone Hsp40/DnaJ family protein (.1) AT2G20560 69 / 1e-12 DNAJ heat shock family protein (.1) AT4G39960 69 / 2e-12 Molecular chaperone Hsp40/DnaJ family protein (.1) AT5G06910 68 / 2e-12 ATJ6, EMB1393 J-domain protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030827 [exp] 672 / 0 AT1G24120 545 / 0.0 ARG1-like 1 (.1) Lus10029202 [exp] 602 / 0 AT1G24120 616 / 0.0 ARG1-like 1 (.1) Lus10010717 [exp] 575 / 0 AT1G24120 590 / 0.0 ARG1-like 1 (.1) Lus10005113 [exp] 444 / 8e-155 AT1G68370 688 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Lus10034344 [exp] 391 / 1e-133 AT1G68370 624 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Lus10011934 [exp] 73 / 1e-13 AT5G48030 499 / 8e-176 gametophytic factor 2 (.1) Lus10035855 [exp] 72 / 2e-13 AT5G48030 524 / 0.0 gametophytic factor 2 (.1) Lus10022297 [exp] 72 / 2e-13 AT3G62600 522 / 0.0 DNAJ heat shock family protein (.1) Lus10019928 [exp] 72 / 2e-13 AT5G03160 637 / 0.0 homolog of mamallian P58IPK (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G036200 [exp] 575 / 0 AT1G24120 566 / 0.0 ARG1-like 1 (.1) Potri.008G193500 [exp] 558 / 0 AT1G24120 568 / 0.0 ARG1-like 1 (.1) Potri.008G123200 [exp] 444 / 2e-154 AT1G68370 670 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Potri.010G122300 [exp] 437 / 5e-152 AT1G68370 671 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Potri.009G065500 [exp] 78 / 3e-15 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.001G271300 [exp] 76 / 2e-14 AT5G48030 530 / 0.0 gametophytic factor 2 (.1) Potri.005G073900 [exp] 72 / 2e-13 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.002G198000 [exp] 70 / 4e-13 AT3G62600 551 / 0.0 DNAJ heat shock family protein (.1) Potri.014G122600 [exp] 70 / 6e-13 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1) Potri.002G141100 [exp] 70 / 1e-12 AT3G44110 504 / 3e-178 DNAJ homologue 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10030660 pacid=23140746 polypeptide=Lus10030660 locus=Lus10030660.g ID=Lus10030660.BGIv1.0 annot-version=v1.0 ATGCCCGGCCACCGATCGAAGTCGGAGAAGGAGGTTTCCGGGATCCGCCGGGACCCTTATGACGTCCTCGGCGTGTCGAGGATCTCCTCCGACCAGGAAA TCAAGAGCGCGTACCGTAAATTGGCACTCAAGTACCATCCTGACAAAACTGCAAATGATCCGGAAGCTGCTGATATGTTCAAAGAAGCTACATTCTCCTA TAACATTTTGTCTGATCCAGAGAAAAGACACCAGTTTGACCATGCTGGCTTTGATGCTGTTGAGGCAGAGAATCAGGATCTGGAGCTGGACCTCTCAAGT TTAGGAACCGTGAACACTATGTTTGCAGCACTTTTTAGTAAACTTGGTGTGCCGATTAAGACTACTGTATCAGTCAGTATTTTGGAAGAAGCACTTAACG GTGCAGTTTCCATTTGCCCACTTGAACTAGGGGATCCAATATCCCGGAAGGTTGAGAAGCAATGTGCTCACTTCTATTCTGTCACAATCTCAGAGCAAGA AGCAAAAGCCGGTCTTGTTTGCCGAGTGCAATCAACTGACAAAAGCAAGTTCAAGTTATTGTTCTTCGATCAGGAAGAAAGCTGTGGATTGAACCTTGCT CTTCAGGAGGAAAGCACCAGAACTGGAAAAGTTACGTCTGCCGGAATGTATTTCCTTGGCTTTCCTACTTATCGGTTGGATAAAAAAGTGAACTCGCTTG CTGCGGCCAAGGATGATGATGCTGCCTTCTTTAAAAGGCTGGATGGCTTTCAACCATGCGAAATAAACGAATTGAAGGCCGGAACACACGTGTTTGCTGT CTATGGCGATAATTTTTTCAAAAGTGTAAGCTATACAATAGAAGCCGTTTGTGCCAAACCTTTTGCAGAAGAGAAGGATAATCTAAGAGCTGTAGAAGCT GAAATCCTCGAAAAAAGAGTAGAAATACGGAAATTCGAGAGCGAATACAAAGAGGTTTTGGTGCAGTTCACAGAAATGACAAGTCGATACGCCCAGGAGA TGCAAGAGGCTCGACTTCTGAACATTTTTCTAATACGCTATCACATTACTAAACATTTTACATCCATATCAAGCTTTCTAAACCTACGTTCTTCAGCATT GCAGATCGACGAGCTCTTAAAGCAAAGGAACGAAATCCACACAGCCTACACAGTTGCACCACCGATGAAGCGGAGTGCGAGCAGAAGTCGGAAGAGGGGC TCCTTCAAGGAGACCCATCGTGAAGATGGAGGAGAAGCAAAAGATAAGAAATCTTCGACGAAAGATCGGTCGAAAAGGAATTGGTTCAGCATCCAGTTGA AAGTAAACAAGGGAAAGGCCTGCTAA
AA sequence Show only first row Show all	>Lus10030660 pacid=23140746 polypeptide=Lus10030660 locus=Lus10030660.g ID=Lus10030660.BGIv1.0 annot-version=v1.0 MPGHRSKSEKEVSGIRRDPYDVLGVSRISSDQEIKSAYRKLALKYHPDKTANDPEAADMFKEATFSYNILSDPEKRHQFDHAGFDAVEAENQDLELDLSS LGTVNTMFAALFSKLGVPIKTTVSVSILEEALNGAVSICPLELGDPISRKVEKQCAHFYSVTISEQEAKAGLVCRVQSTDKSKFKLLFFDQEESCGLNLA LQEESTRTGKVTSAGMYFLGFPTYRLDKKVNSLAAAKDDDAAFFKRLDGFQPCEINELKAGTHVFAVYGDNFFKSVSYTIEAVCAKPFAEEKDNLRAVEA EILEKRVEIRKFESEYKEVLVQFTEMTSRYAQEMQEARLLNIFLIRYHITKHFTSISSFLNLRSSALQIDELLKQRNEIHTAYTVAPPMKRSASRSRKRG SFKETHREDGGEAKDKKSSTKDRSKRNWFSIQLKVNKGKAC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10030660 [exp]	0	1
AT4G09890			Protein of unknown function (D...		Lus10005802 [exp]	14.2	0.7202
AT2G03620		AtMRS2-5, AtMGT...	magnesium transporter 3 (.1.2)		Lus10037081 [exp]	14.3	0.7248
AT1G06260			Cysteine proteinases superfami...		Lus10017674 [exp]	15.9	0.7198
AT1G60010			unknown protein		Lus10029193 [exp]	20.7	0.7107
AT5G35180			Protein of unknown function (D...		Lus10040011 [exp]	24.7	0.7127
AT3G07750			3'-5'-exoribonuclease family p...		Lus10006382 [exp]	26.4	0.7166
AT4G32000			Protein kinase superfamily pro...		Lus10001939 [exp]	31.2	0.6929
AT2G47020			Peptide chain release factor 1...		Lus10038039 [exp]	31.7	0.6434
AT5G06440			unknown protein		Lus10021251 [exp]	32.2	0.6981
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10037473 [exp]	35.7	0.7112

Compare expression of checked genes

Lus10030660 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.