Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70170 332 / 4e-112 MMP matrix metalloproteinase (.1) AT1G59970 330 / 9e-112 Matrixin family protein (.1) AT1G24140 328 / 1e-110 Matrixin family protein (.1) AT4G16640 235 / 2e-74 Matrixin family protein (.1) AT2G45040 224 / 2e-70 Matrixin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010719 [exp] 316 / 2e-106 AT1G70170 305 / 3e-102 matrix metalloproteinase (.1) Lus10028955 [exp] 267 / 1e-86 AT4G16640 360 / 3e-123 Matrixin family protein (.1) Lus10007478 [exp] 258 / 2e-83 AT4G16640 345 / 2e-117 Matrixin family protein (.1) Lus10004728 [exp] 250 / 3e-80 AT4G16640 350 / 2e-119 Matrixin family protein (.1) Lus10032175 [exp] 221 / 1e-69 AT1G59970 224 / 3e-71 Matrixin family protein (.1) Lus10014512 [exp] 218 / 2e-68 AT1G59970 221 / 6e-70 Matrixin family protein (.1) Lus10005605 [exp] 213 / 1e-66 AT1G24140 223 / 9e-71 Matrixin family protein (.1) Lus10039464 [exp] 206 / 5e-64 AT1G24140 224 / 3e-71 Matrixin family protein (.1) Lus10035221 [exp] 191 / 3e-58 AT1G24140 216 / 1e-67 Matrixin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G104600 [exp] 355 / 2e-121 AT1G24140 393 / 5e-136 Matrixin family protein (.1) Potri.015G103900 [exp] 352 / 3e-120 AT1G24140 381 / 3e-131 Matrixin family protein (.1) Potri.001G157500 [exp] 247 / 4e-79 AT2G45040 349 / 2e-119 Matrixin family protein (.1) Potri.003G077400 [exp] 245 / 5e-77 AT2G45040 330 / 1e-110 Matrixin family protein (.1) Potri.014G058200 [exp] 238 / 1e-75 AT2G45040 358 / 3e-123 Matrixin family protein (.1) Potri.013G100400 [exp] 229 / 5e-73 AT1G59970 247 / 4e-80 Matrixin family protein (.1) Potri.019G073700 [exp] 220 / 2e-69 AT1G59970 213 / 7e-67 Matrixin family protein (.1) Potri.019G073800 [exp] 217 / 4e-68 AT1G70170 223 / 1e-70 matrix metalloproteinase (.1) Potri.019G073400 [exp] 216 / 8e-68 AT1G70170 215 / 2e-67 matrix metalloproteinase (.1) Potri.013G033200 [exp] 213 / 2e-66 AT1G24140 246 / 2e-79 Matrixin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0244 [flax] [poplar] PGBD PF01471 [flax] [poplar] PG_binding_1 Putative peptidoglycan binding domain CL0126 [flax] [poplar] Peptidase_MA PF00413 [flax] [poplar] Peptidase_M10 Matrixin
Representative CDS sequence Show only first row Show all	>Lus10030662 pacid=23140715 polypeptide=Lus10030662 locus=Lus10030662.g ID=Lus10030662.BGIv1.0 annot-version=v1.0 ATGAAACTCCGGTGCAAATTGATCTTGTCCATTACATTTCTTTCATTCTTCTTCTGTTCCTTTCCTCCACAAATTTCCGCTAGGTTCCTCTCGAACACAA ACTCAATCCGATCTGATTTCCAACTCAAACCACCCAATTTCACCACCTCCGATTGGGATTCCTTCCGGAACTTATCCGGCAGCCACGCCGGCGAGATTAT CCCGGGCCTTTCAAAGCTAAAGCAATACTTCCGCCACTTTGGCTACCTCCAAGTCCCAGATTCTGCCGTTAACTTCACCGATTCTTTCGATGATTCGCTC GAATTGGCGGTCAGGACTTACCAGAGGAACTTCAATCTCAACGTCACGGGGAAGCTCGACCAGCGGACGATTCGACAGATCGTGCTTCCTAGATGCGGAG ACGCCGATGTAGTCAACGGATCGACGACCATGAGACCACCGTCGTGGAATGGTAATTCAACGACGAAACGTTTCTCGTTTTTCCCGGGGAGGCCGCGGTG GCCGGGGGATCGCCGGAATCTGAGCTACGCGTTCTTTCCGGAAAATAAGCTGAGCAAGGAGGTGAAGGGCGTGTTTGCGGCAGCTTTCGGACGGTGGTCG GAAGCGGCGGCGGGGATGCTGACGTTTAAAGAAACGAAAGACTATTTCGTGGCGGACATCCGGGTCGGGTTTCTGCGTGGGGCCCACGGAGATGGGGATC CGTTCGACGGGGTTTTCGGGACTCTGGCGCACGCGTTCTCGCCGCCGAACGGGCGGCTCCACCTCGACGGGGATGAGGACTGGGTGGTGTCAGGTTTGGC GGACGGGTTGCCGACGGCGGTGGATCTGGAGACGGTGGCGGTGCACGAGATCGGGCATCTGTTGGGGTTGGGTCACTCGTCGGATCCGGAGGCGATTATG TACCCAACCATTACTTCGATGACTAGAAAAGTTGAGCTTGCGCAGGATGATATCGACGGCCTGCGGCAGCTGTACGCCGGCGACTTGAATTGGAACGGTA CATTGTCGCCGTCGGTTGAGGCAAGGGAGACTAGTGGTGGGGCCTACGTGGTGGGTGTGAAGAGATGGGAGATGGATTTATTAATGGCCGTTGGATTAGC GTTGCTTTCTTTATAG
AA sequence Show only first row Show all	>Lus10030662 pacid=23140715 polypeptide=Lus10030662 locus=Lus10030662.g ID=Lus10030662.BGIv1.0 annot-version=v1.0 MKLRCKLILSITFLSFFFCSFPPQISARFLSNTNSIRSDFQLKPPNFTTSDWDSFRNLSGSHAGEIIPGLSKLKQYFRHFGYLQVPDSAVNFTDSFDDSL ELAVRTYQRNFNLNVTGKLDQRTIRQIVLPRCGDADVVNGSTTMRPPSWNGNSTTKRFSFFPGRPRWPGDRRNLSYAFFPENKLSKEVKGVFAAAFGRWS EAAAGMLTFKETKDYFVADIRVGFLRGAHGDGDPFDGVFGTLAHAFSPPNGRLHLDGDEDWVVSGLADGLPTAVDLETVAVHEIGHLLGLGHSSDPEAIM YPTITSMTRKVELAQDDIDGLRQLYAGDLNWNGTLSPSVEARETSGGAYVVGVKRWEMDLLMAVGLALLSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59970			Matrixin family protein (.1)		Lus10030662 [exp]	0	1
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10008523 [exp]	2.4	0.9020
AT1G57680			unknown protein		Lus10008842 [exp]	3.2	0.8528
AT2G46630			unknown protein		Lus10005994 [exp]	3.3	0.9032
AT5G40382			Cytochrome c oxidase subunit V...		Lus10008765 [exp]	4.2	0.8670
AT4G36010			Pathogenesis-related thaumatin...		Lus10041901 [exp]	5.7	0.8236
					Lus10016421 [exp]	9.2	0.8481
					Lus10028522 [exp]	11.0	0.8660
AT4G01575			serine protease inhibitor, Kaz...		Lus10007864 [exp]	11.8	0.8187
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Lus10022918 [exp]	16.1	0.8465
AT5G19040		ATIPT5	Arabidopsis thaliana ISOPENTEN...		Lus10034025 [exp]	16.7	0.8621

Compare expression of checked genes

Lus10030662 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.