Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24840 100 / 5e-26 MADS DIA, AGL61 DIANA, AGAMOUS-like 61 (.1) AT5G60440 98 / 5e-25 MADS AGL62 AGAMOUS-like 62 (.1) AT4G36590 95 / 5e-24 MADS MADS-box transcription factor family protein (.1) AT1G01530 94 / 9e-24 MADS AGL28 AGAMOUS-like 28 (.1) AT1G65360 90 / 2e-22 MADS AGL23 AGAMOUS-like 23 (.1) AT2G34440 78 / 4e-18 MADS AGL29 AGAMOUS-like 29 (.1) AT1G72350 78 / 7e-18 MADS MADS-box transcription factor family protein (.1) AT5G51860 75 / 6e-17 MADS AGL72 AGAMOUS-like 72, K-box region and MADS-box transcription factor family protein (.1.2) AT3G66656 74 / 9e-17 MADS AGL91 AGAMOUS-like 91 (.1) AT3G57230 74 / 3e-16 MADS AGL16 AGAMOUS-like 16 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030824 [exp] 296 / 8e-104 AT2G24840 124 / 4e-35 DIANA, AGAMOUS-like 61 (.1) Lus10012449 [exp] 107 / 1e-28 AT5G60440 157 / 4e-47 AGAMOUS-like 62 (.1) Lus10020511 [exp] 103 / 3e-27 AT5G60440 162 / 9e-49 AGAMOUS-like 62 (.1) Lus10016563 [exp] 85 / 1e-20 AT2G34440 134 / 5e-40 AGAMOUS-like 29 (.1) Lus10040832 [exp] 82 / 1e-19 AT2G34440 135 / 1e-40 AGAMOUS-like 29 (.1) Lus10003481 [exp] 82 / 2e-19 AT5G60440 99 / 7e-25 AGAMOUS-like 62 (.1) Lus10015726 [exp] 81 / 4e-19 AT5G60440 102 / 2e-26 AGAMOUS-like 62 (.1) Lus10011787 [exp] 81 / 4e-19 AT2G34440 133 / 1e-39 AGAMOUS-like 29 (.1) Lus10037450 [exp] 80 / 2e-18 AT5G60440 101 / 7e-26 AGAMOUS-like 62 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G084100 [exp] 121 / 2e-34 AT5G60440 163 / 2e-49 AGAMOUS-like 62 (.1) Potri.017G047300 [exp] 109 / 9e-30 AT5G60440 185 / 2e-57 AGAMOUS-like 62 (.1) Potri.004G131100 [exp] 107 / 2e-29 AT2G34440 137 / 2e-41 AGAMOUS-like 29 (.1) Potri.009G084200 [exp] 103 / 1e-27 AT5G60440 211 / 2e-68 AGAMOUS-like 62 (.1) Potri.008G041500 [exp] 99 / 4e-26 AT5G60440 147 / 4e-43 AGAMOUS-like 62 (.1) Potri.007G113800 [exp] 98 / 2e-25 AT5G60440 191 / 4e-60 AGAMOUS-like 62 (.1) Potri.004G130900 [exp] 92 / 1e-23 AT3G04100 140 / 5e-42 AGAMOUS-like 57 (.1) Potri.017G040700 [exp] 92 / 3e-23 AT5G60440 122 / 5e-34 AGAMOUS-like 62 (.1) Potri.004G002400 [exp] 88 / 9e-22 AT5G60440 107 / 3e-28 AGAMOUS-like 62 (.1) Potri.001G251400 [exp] 88 / 1e-21 AT5G60440 112 / 3e-30 AGAMOUS-like 62 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10030663 pacid=23140773 polypeptide=Lus10030663 locus=Lus10030663.g ID=Lus10030663.BGIv1.0 annot-version=v1.0 ATGGCGAACAACAAGCCTAGCAACAATTCTCCACAGAAGTTGCCAATCAAGAAGATACTCAACAGAAGCCACCTCCAAGTGACGTTCTCCAAGCGACGCG CGGGACTTTTCAAGAAGGCGAGTGAGCTATGCACCCTCTGCGGAGTTGAGATCGCCGTCATTGTTTTCTCCCCCGCCGGCAAGACCTACTCATTCGGACA TTCCGACGTCGTTTCCATCGTCAGGAAATTCTTAACCACCGCCGCCAGTCATCCTCCAAGTGTTGAAGCTCCCAGCCAAATTACCCCCGAGGCGCGTGAG TTGAATGCTGAGTTGAATGCTGAGTTGACGCTAGTTCTTAGTGAGCTGGAAGTTGAGCGGAAGCAGGGGGAGCTTCTGGACCGGATGGTGAAAGCCCAAG AAGCAGAGTATGGGCTGTCGATTGCCGATCTTGGGCTGGATGGGCTGGCCCAGTTGAGGAATGCATTGGAGGAGCTACAACTCAATGTAGAGAATCAGAA AATTTCTGTGGGTTATGAATATGGCAATTTCTCTGAGAACTGGAGTTTCTAA
AA sequence Show only first row Show all	>Lus10030663 pacid=23140773 polypeptide=Lus10030663 locus=Lus10030663.g ID=Lus10030663.BGIv1.0 annot-version=v1.0 MANNKPSNNSPQKLPIKKILNRSHLQVTFSKRRAGLFKKASELCTLCGVEIAVIVFSPAGKTYSFGHSDVVSIVRKFLTTAASHPPSVEAPSQITPEARE LNAELNAELTLVLSELEVERKQGELLDRMVKAQEAEYGLSIADLGLDGLAQLRNALEELQLNVENQKISVGYEYGNFSENWSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24840	MADS	DIA, AGL61	DIANA, AGAMOUS-like 61 (.1)		Lus10030663 [exp]	0	1
AT4G27290			S-locus lectin protein kinase ...		Lus10034815 [exp]	2.2	0.9286
					Lus10014739 [exp]	2.6	0.9536
AT2G40740	WRKY	ATWRKY55, WRKY5...	WRKY DNA-binding protein 55 (....		Lus10034245 [exp]	3.5	0.9339
AT4G30030			Eukaryotic aspartyl protease f...		Lus10031450 [exp]	3.5	0.9291
AT4G16270			Peroxidase superfamily protein...		Lus10017069 [exp]	4.2	0.9341
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10032406 [exp]	4.2	0.9241
AT4G36670		AtPMT6, AtPLT6	polyol/monosaccharide transpor...		Lus10026032 [exp]	7.2	0.8811
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10039454 [exp]	8.4	0.9142
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10022021 [exp]	8.5	0.9217
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003456 [exp]	9.0	0.9217

Compare expression of checked genes

Lus10030663 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.