Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59940 194 / 2e-61 ARR3 response regulator 3 (.1) AT1G10470 194 / 4e-61 IBC7, ATRR1, ARR4, MEE7 maternal effect embryo arrest 7, INDUCED BY CYTOKININ 7, RESPONCE REGULATOR 1, response regulator 4 (.1) AT3G48100 179 / 3e-56 ATRR2, IBC6, ARR5 INDUCED BY CYTOKININ 6, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, response regulator 5 (.1) AT5G62920 175 / 1e-54 ARR6 response regulator 6 (.1) AT1G19050 175 / 2e-54 ARR7 response regulator 7 (.1) AT3G57040 171 / 2e-52 ATRR4, ARR9 RESPONSE REGULATOR 4, response regulator 9 (.1) AT2G41310 166 / 2e-50 ARR8, ATRR3 RESPONSE REGULATOR 8, response regulator 3 (.1) AT3G56380 161 / 1e-49 ARR17 response regulator 17 (.1) AT1G74890 160 / 1e-48 ARR15 response regulator 15 (.1) AT2G40670 154 / 1e-46 ARR16 response regulator 16 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030822 [exp] 365 / 7e-128 AT1G59940 201 / 2e-64 response regulator 3 (.1) Lus10029211 [exp] 262 / 1e-87 AT1G10470 211 / 4e-68 maternal effect embryo arrest 7, INDUCED BY CYTOKININ 7, RESPONCE REGULATOR 1, response regulator 4 (.1) Lus10010723 [exp] 194 / 3e-61 AT1G10470 155 / 1e-46 maternal effect embryo arrest 7, INDUCED BY CYTOKININ 7, RESPONCE REGULATOR 1, response regulator 4 (.1) Lus10042153 [exp] 192 / 6e-61 AT3G48100 213 / 1e-70 INDUCED BY CYTOKININ 6, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, response regulator 5 (.1) Lus10004243 [exp] 188 / 2e-59 AT3G48100 220 / 2e-73 INDUCED BY CYTOKININ 6, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, response regulator 5 (.1) Lus10016334 [exp] 167 / 9e-51 AT3G57040 211 / 5e-69 RESPONSE REGULATOR 4, response regulator 9 (.1) Lus10002750 [exp] 166 / 3e-50 AT3G57040 212 / 4e-69 RESPONSE REGULATOR 4, response regulator 9 (.1) Lus10039524 [exp] 158 / 2e-47 AT3G57040 222 / 2e-73 RESPONSE REGULATOR 4, response regulator 9 (.1) Lus10042938 [exp] 144 / 3e-42 AT1G19050 153 / 7e-47 response regulator 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G037800 [exp] 204 / 7e-65 AT1G59940 202 / 5e-65 response regulator 3 (.1) Potri.015G070000 [exp] 184 / 1e-57 AT3G48100 231 / 1e-77 INDUCED BY CYTOKININ 6, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, response regulator 5 (.1) Potri.006G041100 [exp] 181 / 2e-56 AT3G57040 273 / 4e-93 RESPONSE REGULATOR 4, response regulator 9 (.1) Potri.003G197466 [exp] 180 / 3e-56 AT2G41310 232 / 5e-78 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.T124806 [exp] 179 / 3e-56 AT2G41310 232 / 6e-78 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.008G193000 [exp] 177 / 1e-54 AT1G59940 198 / 1e-63 response regulator 3 (.1) Potri.019G058900 [exp] 170 / 3e-53 AT3G56380 223 / 5e-76 response regulator 17 (.1) Potri.016G038000 [exp] 172 / 4e-53 AT2G41310 242 / 2e-81 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.001G027000 [exp] 171 / 1e-52 AT2G41310 203 / 2e-66 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.002G082200 [exp] 146 / 1e-42 AT3G57040 180 / 1e-56 RESPONSE REGULATOR 4, response regulator 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain
Representative CDS sequence Show only first row Show all	>Lus10030664 pacid=23140637 polypeptide=Lus10030664 locus=Lus10030664.g ID=Lus10030664.BGIv1.0 annot-version=v1.0 ATGGCTAGAAACGGCATCGTATCTGCTCAGCGGTTCGACTGCGGCGTAGTAGCAGGAGGTGGAGGAGGAGTTGATGTTTCGGCCAAGCAGCAGCAAACGC CGGCCGGCGGTGGTTTAGTTAGCGAAGAGGTTCATGTGTTGGCTGTGGATGATAGCCTTATTGATCGGAAAGTCATCGAGCGTTTGCTCAGGAAGAAGTC GTACAAAGTTACGGCGGTGGACAGTGGAATCAGAGCTCTGCAGTTCCTTGGATTGGACGGAGAAGAGAAGAAGAGCTCCTCCGTTGGCAATTTTGATACC TTGAAAATCAAAGTAGATCTGATAATCACTGATTACTGCATGCCGGAGATGACCGGCTACGATCTACTCAAGAAAATCAAAAGATCGTCCAATTTCAGCG AGATTCCGGTGGTGATAATGTCGTCGGAGAATGTCATGACTCGTATTGACCGATGTTTGGAGGAAGGGGCAGAGGATTTCATAGTGAAGCCGGTGAAGCC GTCGGACGTGGAACGCCTAGGCGGATACATGGCTACTAAAGATCCAAAAGAGAAGATCCAGGAACAGGAAGAACGAGTCAACAAAAGAAAGCAGCAAGAC GGTGGTTGCGAGAGCTGCTCCGATCTCTCCAACCTCTCCACCGCCTCTTCAATCTCATCGACTTTTTCGTTCCCCTCAACGTCACCTTCCCCTTCGTCGT TATCGTCCCCGACGACATCCATGTCAACACCGTCGTCTCCGTCGCGATCTCCCTCTCCCTCCCCGGCTGTCTCACTACCGGCGACGTCTGTATCGGCGCC CCCCTCGCCGTCCGTGCTGGACTCTCCGACGAGACGGTTGAAAATGAGCAGTCCTTCAGATTAG
AA sequence Show only first row Show all	>Lus10030664 pacid=23140637 polypeptide=Lus10030664 locus=Lus10030664.g ID=Lus10030664.BGIv1.0 annot-version=v1.0 MARNGIVSAQRFDCGVVAGGGGGVDVSAKQQQTPAGGGLVSEEVHVLAVDDSLIDRKVIERLLRKKSYKVTAVDSGIRALQFLGLDGEEKKSSSVGNFDT LKIKVDLIITDYCMPEMTGYDLLKKIKRSSNFSEIPVVIMSSENVMTRIDRCLEEGAEDFIVKPVKPSDVERLGGYMATKDPKEKIQEQEERVNKRKQQD GGCESCSDLSNLSTASSISSTFSFPSTSPSPSSLSSPTTSMSTPSSPSRSPSPSPAVSLPATSVSAPPSPSVLDSPTRRLKMSSPSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10470		IBC7, ATRR1, AR...	maternal effect embryo arrest ...		Lus10030664 [exp]	0	1
AT3G57040		ATRR4, ARR9	RESPONSE REGULATOR 4, response...		Lus10039524 [exp]	4.2	0.8540
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10017758 [exp]	7.5	0.7269
AT5G15290		CASP5	Casparian strip membrane domai...		Lus10015375 [exp]	8.5	0.8486
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10032218 [exp]	9.7	0.8335
AT1G19230			Riboflavin synthase-like super...		Lus10034890 [exp]	11.7	0.8414
AT5G58300			Leucine-rich repeat protein ki...		Lus10034446 [exp]	12.4	0.7344
AT2G32300		UCC1	uclacyanin 1 (.1)		Lus10027143 [exp]	16.1	0.8316
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10009513 [exp]	19.2	0.8167
AT5G47950			HXXXD-type acyl-transferase fa...		Lus10002893 [exp]	19.8	0.8369
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029331 [exp]	21.0	0.8202

Compare expression of checked genes

Lus10030664 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.