Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15080 699 / 0 Protein kinase superfamily protein (.1) AT3G28690 672 / 0 Protein kinase superfamily protein (.1.2.3) AT3G01300 664 / 0 Protein kinase superfamily protein (.1) AT2G28930 445 / 3e-154 APK1B protein kinase 1B (.1.2.3) AT1G07570 444 / 1e-153 APK1A Protein kinase superfamily protein (.1.2.3) AT5G01020 443 / 2e-153 Protein kinase superfamily protein (.1) AT5G02290 439 / 3e-152 NAK Protein kinase superfamily protein (.1.2) AT2G02800 428 / 3e-147 Kin2, APK2B protein kinase 2B (.1.2) AT1G69790 414 / 2e-142 Protein kinase superfamily protein (.1) AT2G39660 414 / 4e-142 BIK1 botrytis-induced kinase1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005255 [exp] 945 / 0 AT5G15080 720 / 0.0 Protein kinase superfamily protein (.1) Lus10030796 [exp] 705 / 0 AT5G15080 691 / 0.0 Protein kinase superfamily protein (.1) Lus10038087 [exp] 501 / 2e-175 AT5G15080 499 / 6e-175 Protein kinase superfamily protein (.1) Lus10006643 [exp] 495 / 2e-173 AT5G15080 495 / 2e-173 Protein kinase superfamily protein (.1) Lus10013273 [exp] 506 / 4e-169 AT3G17900 696 / 0.0 unknown protein Lus10024391 [exp] 462 / 8e-161 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 460 / 5e-160 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023794 [exp] 458 / 7e-160 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10002697 [exp] 454 / 9e-158 AT1G07570 543 / 0.0 Protein kinase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G077300 [exp] 786 / 0 AT5G15080 690 / 0.0 Protein kinase superfamily protein (.1) Potri.004G123800 [exp] 780 / 0 AT5G15080 694 / 0.0 Protein kinase superfamily protein (.1) Potri.008G194700 [exp] 719 / 0 AT5G15080 671 / 0.0 Protein kinase superfamily protein (.1) Potri.010G033800 [exp] 717 / 0 AT5G15080 669 / 0.0 Protein kinase superfamily protein (.1) Potri.004G129000 [exp] 683 / 0 AT5G15080 659 / 0.0 Protein kinase superfamily protein (.1) Potri.006G066100 [exp] 505 / 2e-177 AT5G15080 503 / 6e-177 Protein kinase superfamily protein (.1) Potri.018G127300 [exp] 499 / 3e-175 AT3G01300 498 / 5e-175 Protein kinase superfamily protein (.1) Potri.001G240400 [exp] 469 / 2e-163 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.009G031300 [exp] 468 / 3e-163 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.016G094300 [exp] 457 / 5e-159 AT1G07570 540 / 0.0 Protein kinase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10030668 pacid=23155209 polypeptide=Lus10030668 locus=Lus10030668.g ID=Lus10030668.BGIv1.0 annot-version=v1.0 ATGGGTTTGGGTTCTGATTCTTCCAAACCCAAGCAGCAGCAGTTTGAGGTGAAATCGACAAGGAAGCAGCATAATCAGAAGAAGAAGAAGGTGAAAGATG TGGGCAGAAGTGGTAAAGATGATGAAAGTGATGATATTGGTTGCTGGTTTAGATTGAGACTGATCGGTGGATGCATGCCTTCAAGATCAAAAGTCGATAG CTCCTTGAGTGGCATCACTAATCAATATGCAAAGAGTGAATCAGCTGATGAGAAAAGAAACGACCAACCTGTTGTTGTCCCAATAGTGTCCTCTACCACT ACGAGTAATGCAGAAAGCACACCTTCAACCCCGAAATTCAGCGAGGAACTAAGGCTGGCTTCTCAGCTCCGGAAGTTTACCTTTAATGACCTTAAACTAG CAACTAGGAACTTCAGGCCCGAAAGTCTCCTCGGGGAAGGCGGGTTTGGATGCGTCTTCAAAGGGTGGATTGAAGAGAACGGGACGGCTCCTGTGAAACC AGGGACTGGACTTACTGTTGCTGTGAAAACCCTGAACCACGACGGGCTTCAGGGTCACAAAGAATGGCTTGCTGAAGTGAATTTTCTTGGGAATCTTCTC CACCCGAACTTGGTTAAGTTGATTGGTTACTGCATTGAAGACGATCAAATGCTGTTGGTTTACGAGTTCATGCCTCGTGGAAGCTTGGAGAACCACCTCT TCAGGAGGTCCTTGCCTCTTCCTTGGTCTATCAGAATGAAAATTGCACTTGGTGCAGCAAGGGGTCTTGCCTTCCTTCATGAAGAAGCTGAAAGACCAGT CATATATCGTGATTTCAAAACATCGAATATCTTACTTGATGCGGATTACAATGCCAAACTCTCCGACTTCGGCCTTGCTAAGGATGGTCCGGAGGGAGAT AAAACTCACGTTTCCACTCGAGTTATGGGGACTTACGGCTATGCTGCCCCGGAATATGTGATGACTGGACACTTGACCTCGAAGAGCGATGTGTACAGCT TCGGAGTCGTTCTACTAGAAATGTTAACAGGACGGAGATCGATGGACAAAAACCGGCCAAACGGAGAGCACAACCTCGTGGAATGGGCGAGGCCACATTT CGCCGACAGGAAAAGATTCTACAGGCTACTAGACCCTCGTCTCGAAGGCCATTTCTCAATCAAAGGTGCTCAAAAGGCCATTCAGCTAGCCGGGATGTGT CTAAGCCGTGATCCAAAAGCCAGACCTCGGATGAGTGAGGTTGTGGACACGTTAAAGCCTTTGCCGAGCTTGAAAGACATGGCCAGCTCTTCTTATTACT TCCAGACGATGCAAGCTGAGCGTAATAAGTCGAATGTGAATGTGAATGCGAAGAATGGTGGAGTTAGAGCCCAGGGAGGAGGTTTCATGACGAGGAATGG ACAGCCTCTGAGGAGCTTGTCGAGTTTAAGTGGTACGCGTGCTTCTCCACATAACCAGCCTTACCAGTCACCAAAACCTAATGGGAAGAAGTCATAG
AA sequence Show only first row Show all	>Lus10030668 pacid=23155209 polypeptide=Lus10030668 locus=Lus10030668.g ID=Lus10030668.BGIv1.0 annot-version=v1.0 MGLGSDSSKPKQQQFEVKSTRKQHNQKKKKVKDVGRSGKDDESDDIGCWFRLRLIGGCMPSRSKVDSSLSGITNQYAKSESADEKRNDQPVVVPIVSSTT TSNAESTPSTPKFSEELRLASQLRKFTFNDLKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGNLL HPNLVKLIGYCIEDDQMLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAARGLAFLHEEAERPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPEGD KTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPHFADRKRFYRLLDPRLEGHFSIKGAQKAIQLAGMC LSRDPKARPRMSEVVDTLKPLPSLKDMASSSYYFQTMQAERNKSNVNVNAKNGGVRAQGGGFMTRNGQPLRSLSSLSGTRASPHNQPYQSPKPNGKKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15080			Protein kinase superfamily pro...		Lus10030668 [exp]	0	1
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10001862 [exp]	2.0	0.8638
AT5G53850			haloacid dehalogenase-like hyd...		Lus10015967 [exp]	2.6	0.8644
AT5G45920			SGNH hydrolase-type esterase s...		Lus10013940 [exp]	7.1	0.8572
AT2G14170		ALDH6B2	aldehyde dehydrogenase 6B2 (....		Lus10020459 [exp]	11.7	0.8532
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10000925 [exp]	12.0	0.8453
AT1G54610			Protein kinase superfamily pro...		Lus10004144 [exp]	12.2	0.8573
AT2G31510		ATARI7, ARI7	ARABIDOPSIS ARIADNE 7, ARIADNE...		Lus10025566 [exp]	12.7	0.8298
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Lus10006587 [exp]	14.0	0.8012
AT2G36970			UDP-Glycosyltransferase superf...		Lus10021437 [exp]	14.5	0.8364
AT1G21650		SECA2	Preprotein translocase SecA fa...		Lus10018865 [exp]	21.5	0.8343

Compare expression of checked genes

Lus10030668 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.