Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01270 522 / 0 Pectate lyase family protein (.1) AT5G15110 519 / 0 Pectate lyase family protein (.1) AT1G14420 481 / 6e-168 AT59 Pectate lyase family protein (.1) AT2G02720 460 / 8e-160 Pectate lyase family protein (.1) AT3G07010 436 / 3e-151 Pectin lyase-like superfamily protein (.1) AT4G13710 438 / 5e-151 Pectin lyase-like superfamily protein (.1.2) AT5G48900 434 / 3e-150 Pectin lyase-like superfamily protein (.1) AT1G67750 429 / 2e-148 Pectate lyase family protein (.1) AT5G63180 427 / 4e-147 Pectin lyase-like superfamily protein (.1) AT4G13210 423 / 1e-145 Pectin lyase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005254 [exp] 849 / 0 AT3G01270 558 / 0.0 Pectate lyase family protein (.1) Lus10033018 [exp] 630 / 0 AT5G15110 561 / 0.0 Pectate lyase family protein (.1) Lus10036721 [exp] 502 / 1e-176 AT3G01270 565 / 0.0 Pectate lyase family protein (.1) Lus10037207 [exp] 495 / 5e-174 AT3G01270 561 / 0.0 Pectate lyase family protein (.1) Lus10015359 [exp] 474 / 2e-168 AT3G01270 396 / 2e-137 Pectate lyase family protein (.1) Lus10023623 [exp] 464 / 1e-161 AT3G01270 517 / 0.0 Pectate lyase family protein (.1) Lus10030791 [exp] 463 / 3e-161 AT5G15110 533 / 0.0 Pectate lyase family protein (.1) Lus10011885 [exp] 428 / 1e-147 AT3G07010 674 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10014887 [exp] 427 / 2e-147 AT5G63180 620 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G078400 [exp] 630 / 0 AT5G15110 481 / 7e-168 Pectate lyase family protein (.1) Potri.004G124100 [exp] 616 / 0 AT5G15110 533 / 0.0 Pectate lyase family protein (.1) Potri.008G148800 [exp] 527 / 0 AT5G15110 523 / 0.0 Pectate lyase family protein (.1) Potri.015G064700 [exp] 518 / 0 AT5G15110 511 / 5e-180 Pectate lyase family protein (.1) Potri.008G182200 [exp] 429 / 2e-148 AT1G67750 671 / 0.0 Pectate lyase family protein (.1) Potri.015G087800 [exp] 429 / 2e-148 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.012G091500 [exp] 427 / 1e-147 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.001G052300 [exp] 427 / 6e-147 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.010G051800 [exp] 424 / 9e-146 AT1G67750 645 / 0.0 Pectate lyase family protein (.1) Potri.003G175900 [exp] 422 / 6e-145 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00544 [flax] [poplar] Pectate_lyase_4 Pectate lyase CL0268 [flax] [poplar] PF04431 [flax] [poplar] Pec_lyase_N Pectate lyase, N terminus
Representative CDS sequence Show only first row Show all	>Lus10030670 pacid=23155251 polypeptide=Lus10030670 locus=Lus10030670.g ID=Lus10030670.BGIv1.0 annot-version=v1.0 ATGGGAAGGCTCGTGTTCATTCTGTTCTTCTCCTTTGCAACCATAATTCCATGTCTCCGAGCACACGATGCTACCAAAATCAAGCCACAACACGACGAGG TGTGGCAAAAGAGAGCAGAGCAGGCTAAGAGGAATCTCATGGCGGCTTACGTTCCGAATCCGTTGGACTCCGACGATGATGACTCGGATCCTCCATCTTC AAAGAGTGGAAGCTCTCGGAAGAGCCTGAGTGGGGATGAAGATGTAGGTAGAAAGGAGGGAACGATGAAGTACAAGACAAGGAGGAGTCTGAAGCAGGGG AAGAGGAAGTACCTAGGGCCATGTGCAACGACCAACCCAATGGACGAATGCTGGAGGTGCAAAGAGGATTGGGCAACCAATCGTCGCCAGATGGCGAAAT GCGCATTGGGGTTCGGAAGGAAGACCACCGGTGGCATCGACGGGCGGTTGTATGTGGTGACTGATAACTCAGACGACGACTTCATCAATCCTGTGCCAGG GACTTTGAGGTACGCGGTGATCCAGACTGAGCCGTTGTGGATCATATTCGCTCACGACATGAACATCAAGCTAAACGCAGAGCTTCTGATGACGGGGAAC AAGACAATCGATGGACGTGGAGCCAATGTCCACATTGCCTATGGAGCTGGGATCACTGTCCAGTTCGTCGAGAATGTGATCATCCACGGGATCCACGTCC ATCACATCGTCCCCACGGATGGCGGGATGATAAGGGATTCCGTGGATCATTATGGTCTCAGGACTAAGAGCGATGGGGATGGGATCTCCATCTTCGGTTC CACCAATGTGTGGATTGATCATGTGTCCATGTCTCAGTGCACTGATGGGCTCATTGATGCCATTCAAGGCTCAACTGCTATCACCATCTCCAATTCTCAC TTCACCCACCATAATGATGCGATCTTGTTGGGGGCAAGTGACAGCTTCTCTGGAGATCAATTCATGCAGGTCACGGTTGCATACAACCATTTCGGACAAG AATTAGTTCAGAGGATGCCAAGGTGCAGATGGGGTTTCTTCCATGTTGTCAACAATGACTACACCCATTGGCGTCTCTACGCCATTGGAGGTAGCCGACA TCCCACCATCATCAGCCAGGGTAACCGCTTCATTGCCCCACCTGAAAAGGAGCTCAAACAGGTGACTAAAAGAGACTACGCGGCGGAATCAGAATGGAGG AACTGGATATGGAGATCGGAGGGCGACGTGTTCATGAATGAGGCGTTCTTCATCGAATCAGGGCAACCCAATTTGAAGACGAGGCCATCAAAGAAGTTTA TGATCAAGCCCCAACCAGGATCACTCGCAACTAAGATGACCAGATTTGCTGGGGCTCTTGAGTGCAAACCTAAACAGAAGTGTTGA
AA sequence Show only first row Show all	>Lus10030670 pacid=23155251 polypeptide=Lus10030670 locus=Lus10030670.g ID=Lus10030670.BGIv1.0 annot-version=v1.0 MGRLVFILFFSFATIIPCLRAHDATKIKPQHDEVWQKRAEQAKRNLMAAYVPNPLDSDDDDSDPPSSKSGSSRKSLSGDEDVGRKEGTMKYKTRRSLKQG KRKYLGPCATTNPMDECWRCKEDWATNRRQMAKCALGFGRKTTGGIDGRLYVVTDNSDDDFINPVPGTLRYAVIQTEPLWIIFAHDMNIKLNAELLMTGN KTIDGRGANVHIAYGAGITVQFVENVIIHGIHVHHIVPTDGGMIRDSVDHYGLRTKSDGDGISIFGSTNVWIDHVSMSQCTDGLIDAIQGSTAITISNSH FTHHNDAILLGASDSFSGDQFMQVTVAYNHFGQELVQRMPRCRWGFFHVVNNDYTHWRLYAIGGSRHPTIISQGNRFIAPPEKELKQVTKRDYAAESEWR NWIWRSEGDVFMNEAFFIESGQPNLKTRPSKKFMIKPQPGSLATKMTRFAGALECKPKQKC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01270			Pectate lyase family protein (...		Lus10030670 [exp]	0	1

Compare expression of checked genes

Lus10030670 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.