Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28715 693 / 0 ATPase, V0/A0 complex, subunit C/D (.1.2) AT3G28710 692 / 0 ATPase, V0/A0 complex, subunit C/D (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005252 [exp] 729 / 0 AT3G28715 691 / 0.0 ATPase, V0/A0 complex, subunit C/D (.1.2) Lus10033022 [exp] 620 / 0 AT3G28715 590 / 0.0 ATPase, V0/A0 complex, subunit C/D (.1.2) Lus10015361 [exp] 126 / 3e-34 AT3G28715 120 / 2e-32 ATPase, V0/A0 complex, subunit C/D (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G079200 [exp] 707 / 0 AT3G28715 691 / 0.0 ATPase, V0/A0 complex, subunit C/D (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01992 [flax] [poplar] vATP-synt_AC39 ATP synthase (C/AC39) subunit
Representative CDS sequence Show only first row Show all	>Lus10030672 pacid=23155325 polypeptide=Lus10030672 locus=Lus10030672.g ID=Lus10030672.BGIv1.0 annot-version=v1.0 ATGTACGGATTCGAAGCTATGAGTTTCAACGTCCACGGTGGCTACCTGGAAGCCATCGTCAGAGGACACAGATCGGGCCTTCTCACCGCTGCTGATTACA ATAATCTCTGCCAGTGCGAGTCCCTTGATGACATCAAGATGCACCTCTCTGCCACCGAGTACGGTCCCTATCTTCAGAATGAACCTTCTCCATTGCATAC GACTACAATTGTGGAGAAATGCACCCTTAAACTTGTGGATGAGTACAAACACATGCTATGTCAAGCTACGGAGCCTTTGTCTACCTTCCTTGAGTATTGC ACGTATGGTCATATGATAGACAATGTTGTGTTGATTGTGACTGGAACTTTGCACGAGAGAGATGTGCAAGAGCTATTGGAGAAATGCCACCCTCTTGGCA TGTTTGACAGCATTGCCACCCTGGCTGTCGCCCACAACATGAGGGAACTTTACCGTCTGGTGCTTGTTGACACACCATTGGCTCCTTACTTCTCCGAGTG CATCACTTCAGAGGACTTGGATGATATGAATATTGAGATCATGAGGAATACACTTTACAAGGCTTATCTGGAAGATTTTTACAAGTTTTGCCAGAAACTT GGTGGAGCTACCGCCGAGATTATGTCTGATCTTCTTGCATTTGAAGCTGACAGGAGAGCTGTTAATATCACCATAAATAGCATTGGCACAGAGCTTACTC GTGATGACCGAAGGAAACTGTACTCTAATTTCGGCCTACTGTATCCTTATGGACACGAGGAGCTTGCTGTCTGCGAGGACTTGGATCAGGTCCGTGGTTC TATGGAAAAGTACCCTCCCTATCAGGCCATATTCTCCAAGTTATCATACGGTGAAAGCCAGCTTCTTGATAAAGCATTTTACGAGGAAGAAGTAAAAAGG CTCTGCTTGTCTTTTGAGCAGCAGTTCCACTATGGGGTTTTCTTCGCATACATAAGATTGAGGGAGCAGGAGATTAGGAATCTGATGTGGATCTCAGAAT GCGTAGCCCAGAACCAGAAGTCGAGAGTTCACGACAGTGTCGTCTTCATATTCTAG
AA sequence Show only first row Show all	>Lus10030672 pacid=23155325 polypeptide=Lus10030672 locus=Lus10030672.g ID=Lus10030672.BGIv1.0 annot-version=v1.0 MYGFEAMSFNVHGGYLEAIVRGHRSGLLTAADYNNLCQCESLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYC TYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAHNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKL GGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDLDQVRGSMEKYPPYQAIFSKLSYGESQLLDKAFYEEEVKR LCLSFEQQFHYGVFFAYIRLREQEIRNLMWISECVAQNQKSRVHDSVVFIF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28715			ATPase, V0/A0 complex, subunit...		Lus10030672 [exp]	0	1
AT3G24160		PMP	putative type 1 membrane prote...		Lus10000760 [exp]	2.2	0.8342
AT5G16730			Plant protein of unknown funct...		Lus10020373 [exp]	4.5	0.8177
AT4G09810			Nucleotide-sugar transporter f...		Lus10005790 [exp]	6.9	0.8117
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10022790 [exp]	6.9	0.8202
AT1G12840		ATVHA-C, DET3	DE-ETIOLATED 3, ARABIDOPSIS TH...		Lus10035159 [exp]	8.0	0.8187
AT4G39220		ATRER1A	Rer1 family protein (.1)		Lus10041765 [exp]	8.5	0.7856
AT1G77140		ATVPS45, VPS45	vacuolar protein sorting 45 (....		Lus10028622 [exp]	12.2	0.8201
AT1G54220			Dihydrolipoamide acetyltransfe...		Lus10006877 [exp]	14.9	0.7777
AT4G08900		ARGAH1	arginine amidohydrolase 1, arg...		Lus10030288 [exp]	16.2	0.7619
AT1G08190		ZIP2, ATVPS41, ...	ZIGZAG SUPPRESSOR 2, vacuolar ...		Lus10005352 [exp]	17.5	0.7685

Compare expression of checked genes

Lus10030672 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.