Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15140 358 / 1e-118 Galactose mutarotase-like superfamily protein (.1) AT3G47800 333 / 6e-111 Galactose mutarotase-like superfamily protein (.1) AT3G17940 284 / 5e-92 Galactose mutarotase-like superfamily protein (.1) AT3G01260 236 / 2e-72 Galactose mutarotase-like superfamily protein (.1) AT3G28760 199 / 2e-58 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005251 [exp] 612 / 0 AT5G15140 370 / 2e-126 Galactose mutarotase-like superfamily protein (.1) Lus10015365 [exp] 541 / 0 AT5G15140 403 / 7e-138 Galactose mutarotase-like superfamily protein (.1) Lus10007251 [exp] 537 / 0 AT5G15140 404 / 7e-139 Galactose mutarotase-like superfamily protein (.1) Lus10023611 [exp] 343 / 2e-114 AT3G47800 462 / 5e-164 Galactose mutarotase-like superfamily protein (.1) Lus10010976 [exp] 281 / 1e-90 AT3G17940 497 / 4e-178 Galactose mutarotase-like superfamily protein (.1) Lus10000452 [exp] 243 / 2e-76 AT3G17940 436 / 1e-154 Galactose mutarotase-like superfamily protein (.1) Lus10026181 [exp] 242 / 2e-75 AT3G17940 500 / 3e-179 Galactose mutarotase-like superfamily protein (.1) Lus10005250 [exp] 234 / 1e-71 AT3G28760 529 / 0.0 unknown protein Lus10024242 [exp] 132 / 8e-36 AT3G47800 155 / 3e-46 Galactose mutarotase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G129700 [exp] 419 / 2e-144 AT3G47800 414 / 5e-145 Galactose mutarotase-like superfamily protein (.1) Potri.017G080200 [exp] 406 / 2e-139 AT3G47800 406 / 9e-142 Galactose mutarotase-like superfamily protein (.1) Potri.017G080100 [exp] 399 / 1e-136 AT3G47800 397 / 3e-138 Galactose mutarotase-like superfamily protein (.1) Potri.017G080000 [exp] 393 / 2e-134 AT5G15140 432 / 3e-150 Galactose mutarotase-like superfamily protein (.1) Potri.012G128800 [exp] 357 / 4e-120 AT3G47800 459 / 1e-162 Galactose mutarotase-like superfamily protein (.1) Potri.012G045875 [exp] 300 / 2e-98 AT3G17940 555 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.017G129300 [exp] 285 / 3e-92 AT3G17940 496 / 1e-177 Galactose mutarotase-like superfamily protein (.1) Potri.017G080300 [exp] 209 / 3e-62 AT3G28760 528 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01959 [flax] [poplar] DHQS 3-dehydroquinate synthase II CL0103 [flax] [poplar] Gal_mutarotase PF01263 [flax] [poplar] Aldose_epim Aldose 1-epimerase
Representative CDS sequence Show only first row Show all	>Lus10030673 pacid=23155287 polypeptide=Lus10030673 locus=Lus10030673.g ID=Lus10030673.BGIv1.0 annot-version=v1.0 ATGGCCAAGTCTTCTTCTCAGCTCCTCTGCTTCAGTCTGCTCCTCCTTAGTACTGCAATTGCAGCAAATGCTACAGACAAGATAGGGAGTTATGAGCTGA AGAAAGGGAAAATGTCTCTCAAGCTCACCAACTATGGCGCCCATATCATCTCCTTCGTCATCCCTGACAAATCTGGCAACCTCAGCGACGTCGTCCTTGG CTATGATACTCCTGAGGCTTACCAGAATGACACGCAGAGCTTCGGAGCCACGGTTGGAAGAGTTGCCAACAGAATCGCCGGTGCTCAGTTCACTCTGAAT GGCACTGTTGTCAAATTGGTACCCAACGAGGGCAAGAACGTGCTTCACGGTGGCCCAGTTGGGTTCTCAAAAGTGGTCTGGAAAGTGAACGAGTACCAGC CAAATGCCTCCAGGCCTTTTGTTGAGTTTCTCTACATCAGCAAAGATGGCGATCAAGGATTCCCCGGAGATCTAGTAGCAGTGGTGAAGTACACCCTCCT GGAGTACAACCAATTGAGCATCAAGATGAAAGCCAAAGCACTCAACAAACCGACTCCGGTCAACCTGATCAACCACGCCTACTGGAACCTGGGTGGCCAC GACAGTGGCGACATCTTATCCGAGGAACTTCAAATATTCTCCTCACACTATACCCCTGTCGACGACCAGCTCATCCCGACCGGCAAAATCGATACCGTGG TAGGAACCGTTTTTGATTTCATGAAACCCACACCGGTCGGTGAGAGAATCGGTCAGCTCAAACTCGGGTACGACATCAACTACGTGTTGGACGTGAGTCC TGTACACGCACGTGGGAACAAGAGAGGGTTGAGGAAGGCTGCAATGGTTCATGACAAAAAATCAGGGAGGGTGATGGAAGTGTTCACGAACCAACCCGGG ATGCAGCTGTATTCGAGTGGGCAGCTCGGTGACACAAAGGGGAAGAATGGAGTGGTGTACAAGAGACATCATGGTTTGTGCTTGGAGACTCAGGCTTTCC CTGATGCTAATTTAGGTCCTAGCTTTCCTGATTCTTACGGTTCTATACTTAGCCTTATCATGAAAATGTTGTGTAAGATAATACCTGCAGAGAACATTGT AGCAGCATTCCAAGGAAGTCAGAAAACAGTCTTTGCCATCTCGAAATCACCTTCCGAGGCACAGGTTTTCCTCGAGGTAATTTTGAATAGATTGAGTATA GATTACCAACCAAACCCATCTCAAATCCTTTGCCACATTATGCCTTCATTGTCTCTTATTCTAAAAGTTGAAGATGTCGAACCTATACTCGAGCTCAAGG AGTATATTGGCAGAAGGAACGAAGCACAAAATGCATTGAGTTTAACACGAGCTACTACAACTCGGATAGAAGCAGTTGGAATGGGCGATCGAGTTTGTGT CGATCTCTGCAGCCTGATGAGACCTGGCGAAGGACTGCTGGTCGGTTCGTTTGCTAGAGGACTATTCCTAGTTCACTCAGAATGCCTGGAGTCTAATTAC ATTGCAAGCAGGCCTTTTCGTGTCAATGCTGTGAGTTGA
AA sequence Show only first row Show all	>Lus10030673 pacid=23155287 polypeptide=Lus10030673 locus=Lus10030673.g ID=Lus10030673.BGIv1.0 annot-version=v1.0 MAKSSSQLLCFSLLLLSTAIAANATDKIGSYELKKGKMSLKLTNYGAHIISFVIPDKSGNLSDVVLGYDTPEAYQNDTQSFGATVGRVANRIAGAQFTLN GTVVKLVPNEGKNVLHGGPVGFSKVVWKVNEYQPNASRPFVEFLYISKDGDQGFPGDLVAVVKYTLLEYNQLSIKMKAKALNKPTPVNLINHAYWNLGGH DSGDILSEELQIFSSHYTPVDDQLIPTGKIDTVVGTVFDFMKPTPVGERIGQLKLGYDINYVLDVSPVHARGNKRGLRKAAMVHDKKSGRVMEVFTNQPG MQLYSSGQLGDTKGKNGVVYKRHHGLCLETQAFPDANLGPSFPDSYGSILSLIMKMLCKIIPAENIVAAFQGSQKTVFAISKSPSEAQVFLEVILNRLSI DYQPNPSQILCHIMPSLSLILKVEDVEPILELKEYIGRRNEAQNALSLTRATTTRIEAVGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNY IASRPFRVNAVS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15140			Galactose mutarotase-like supe...		Lus10030673 [exp]	0	1
AT5G11420			Protein of unknown function, D...		Lus10035910 [exp]	2.2	0.9669
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10004348 [exp]	3.7	0.9506
AT3G20300			Protein of unknown function (D...		Lus10009722 [exp]	6.7	0.9342
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Lus10021845 [exp]	7.2	0.9428
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10028929 [exp]	7.3	0.9440
AT2G03350			Protein of unknown function, D...		Lus10037126 [exp]	7.7	0.9319
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Lus10028780 [exp]	9.9	0.9259
AT3G54770			RNA-binding (RRM/RBD/RNP motif...		Lus10023485 [exp]	9.9	0.9236
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Lus10005327 [exp]	9.9	0.9296
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10030383 [exp]	10.2	0.9215

Compare expression of checked genes

Lus10030673 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.