Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28860 2132 / 0 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT2G36910 1287 / 0 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT4G25960 1234 / 0 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1) AT1G10680 1222 / 0 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT1G28010 1181 / 0 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT3G28390 1053 / 0 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT3G62150 1053 / 0 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT2G47000 1048 / 0 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT1G02520 1043 / 0 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT3G28380 1028 / 0 ABCB17, PGP17 ATP-binding cassette B17, P-glycoprotein 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005249 [exp] 2401 / 0 AT3G28860 2267 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10023929 [exp] 1294 / 0 AT2G36910 2300 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10017271 [exp] 1181 / 0 AT1G27940 1689 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Lus10017270 [exp] 1176 / 0 AT1G27940 1686 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Lus10004571 [exp] 1070 / 0 AT4G25960 1732 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Lus10014427 [exp] 1058 / 0 AT2G36910 1913 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10009988 [exp] 1050 / 0 AT3G62150 1896 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10038049 [exp] 1047 / 0 AT3G62150 1891 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10005839 [exp] 1046 / 0 AT3G28345 1834 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G081100 [exp] 2248 / 0 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Potri.006G123900 [exp] 1280 / 0 AT2G36910 2138 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.001G139600 [exp] 1242 / 0 AT4G25960 1962 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.003G094400 [exp] 1239 / 0 AT4G25960 2000 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.002G019600 [exp] 1199 / 0 AT1G27940 1654 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Potri.001G139700 [exp] 1194 / 0 AT4G25960 1875 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.010G003000 [exp] 1063 / 0 AT2G47000 1585 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Potri.014G113500 [exp] 1050 / 0 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.002G187400 [exp] 1039 / 0 AT3G62150 1702 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.017G085000 [exp] 1035 / 0 AT3G28345 1774 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10030674 pacid=23155241 polypeptide=Lus10030674 locus=Lus10030674.g ID=Lus10030674.BGIv1.0 annot-version=v1.0 ATGGCTGATAGTAGTAGTGTTCCAGAGGCCACCAAGCCGGCATTGCCGGAGGCCGACAAGAAGAAAGAGCAGAGCCTCCCCTTCCACAAGCTCTTCTGCT TCGCTGACAAGTACGATTGGATGCTGATGGCTTTCGGTAGCCTCGGAGCCATCATCCACGGCTCCTCCATGCCCGTCTTCTTCCTCTTGTTCGGCGAAAT GGTTAATGGCTTCGGCAAGAACCAGTCCGATTTGCCTACTATGATCCACGAAGTATCCAAGTACGCGCTCTACTTCGTCTACCTGGGTCTCATTGTTTGC GTCTCATCCTACGCAGAAATTGGGTGCTGGATGTACAGTGGGGAGAGGCAAGTGAGCAGCTTGAGGAAGAAGTATTTGGAAGCGGTGCTGAAGCAAGACG TAGGGTTCTTCGATACGGACGCAAGGACTGGAGATATAGTCTTCAGCGTCTCCACGGACACTCTACTTGTCCAAGATGCCATTAGTGAGAAGGTGGGCAA TTTTATCCATTACCTGTCGACGTTCCTGGCCGGGCTGGTGGTTGGATTTGTGTCAGCATGGAAGCTAGCGTTGCTCAGTGTGGCTGTGATCCCCGGAATA GCTTTCGCCGGTGGACTCTATGCCTACACTCTCACTGGACTCACCTCCAAGAGCCGGGAGTCTTATGCTCAGGCTGGCATAGTTGCTGAACAGGCTATTG CACAGGTTCGAACGGTTTACTCGTATGTTGGGGAGACCAAAGCTTTGAATGCCTTTTCAGATGCCATACAGAACACCTTGAAGCTTGGGTACAAGGCTGG AATGGCCAAAGGATTAGGGCTAGGATGCACCTATGGAATAGCATGCATGTCATGGGCTCTTGTGTTCTGGTATGCTGGTGTTTTCATCAGGAACGGCCAG ACCGATGGAGGAAAGGCGTTCACAGCAATTTTCTCTGCAATTGTTGGTGGAATGAGTTTAGGGCAGTCATTTTCCAACCTTGGTGCATTTAGCAAAGGAA AAGCCGCTGGATACAAGTTGATGGAAATAATCAACCAAAAGCCTACCATCGTACAGGATTCATTGGATGGGAAATGCTTGGATGAGGTTACTGGGAACAT TGAGTTGAAGAATGTGACTTTTAGCTACCCATCTAGGCCAGACGTCGTTATCTTCAGAGATTTCTCAATCTTCTTTCCTGCTGGCAAGACTGTTGCTGTT GTAGGCGGCAGTGGATCAGGGAAAAGCACTGTTATTTCCTTGATAGAGAGGTTTTATGATCCTAGCCAGGGACAAATTTTGCTGGATAATGTGGATATTA AAACCTTGCAACTCAAGTGGTTACGTGATCAGATAGGCTTGGTGAACCAGGAACCGGCTCTGTTTGCTACCACTATACTCGAGAACATACTCTACGGGAA GCCAGATGCAACAATGGATGAAGTAGAGGCTGCTGCTTCCGCTGCAAATGCTCATAGCTTCATCACCCTGCTTCCCAATGGATATAATACTCAGGTGGGA GAGCGAGGAGTACAGCTCTCTGGTGGCCAGAAACAGAGGATTGCAATAGCAAGAGCTATGTTGAAGAATCCTAAAATCCTTCTACTTGACGAAGCAACAA GTGCTCTCGATGCAGGCTCTGAGAGCATCGTTCAGGAAGCTTTGGATCGTCTCATGGTAGGAAGAACAACTGTTGTAGTTGCCCATCGACTTTCCACTAT CAGGAATGTCGATACCATTGCAGTCATCCAACAAGGGCAAGTCGTGGAGACCGGAACCCATGAAGAACTGATAGCCAAAGCAGGTGCCTATGCCACTTTG ATCAGATTTCAAGAAATGGTGAGAAACAGAGAATTTGCAAACCCATCGACCCGACGATCTCGCTCATCGCGCCTCAGCCACTCGCTTTCAACAAAGTCGC TTAGCCTCCGATCTGGAAGTCTCCGCAACTTGAGCTATTCCTACAGTACAGGAGCAGATGGGCGCATTGAGATGGTTTCAAATGCTGAGACAGATCGTAA AAATCCGGCACCGAAAGGGTACTTCTTCAGGCTGCTCACACTAAATGCACCGGAGTGGCCATACTCGATAATGGGAGCTATAGGATCTGTGCTTTCAGGT TTCATTGGTCCAACATTCGCCATAGTCATGAGTAATATGATTGAGGTTTTCTACTATAAAAATCCACAATCAATGGAGAGGAAGACAAAAGAGTACGTTT TCATCTACATAGGTGCTGGCATCTATGCTGTTGTGGCATATTTGATTCAACATTACTTCTTCAGCATAATGGGAGAGAACTTAACTACAAGAGTTAGAAG AATGATGCTTGCTGCAATTCTGAGGAATGAAGTGGGATGGTTCGATGAAGAAGAGCACAACTCAAGCCTGGTTGCTGCGAGATTAGCAACAGATGCTGCA GATGTAAAATCTGCAATAGCTGAGAGGATATCTGTGATACTCCAGAACATGACCTCTCTCCTCACCTCATTCATAGTGGCTTTCATCATTGAATGGAGAG TCTCACTTCTCATTCTGGGGACCTTCCCTCTACTGGTCCTTGCCAACTTTGCTCAGCAACTCTCTCTCAAAGGATTTGCAGGGGACACAGCCAAAGCCCA TGCAAAAACCAGCATGATTGCAGGAGAAGGAGTAAGCAATATCAGAACCGTTGCTGCGTTTAATGCTCAAGACAAGATCCTATCTTTATTCTGCCACGAG CTTCGCGGCCCACAACTTCATAGCTTAAAGAGAAGCCAGATCTCTGGTCTCCTCTTCGGCATATCTCAACTTGCTCTCTACGCATCCGAAGCTCTCATAT TATGGTACGGTTCTCATCTCGTGAGCAGAGGCGTATCGACATTCTCCAAAGTTATCAAGGTGTTCGTTGTATTGGTTGTGACGGCCAATTCAGTTGCAGA AACTGTCAGCCTTGCTCCCGAAATAATCAGGGGCGGTGAAGCAGTCGGTTCGGTTTTCTCAATCCTAGACAGGTCGACTCGGATCGATCCGGATGATTCC GAGGCAGAACCTGTCGAATCGATCCGTGGAGAGATTGAACTTCGGCATGTTGATTTTTCATACCCAACAAGGCCAGATGTTCCAGTGTTCCAAGATTTCA ACTTGAGGATTCGTGCCGGGCAGAGTCAGGCACTCGTTGGAGCAAGTGGATGCGGGAAGAGTTCGGTGATTGCATTGATCGAGCGTTTCTACGATCCATC TGCTGGAAAAGTTATGATCGATGGAAAGGACATTCGAAGACTGAACTTAAAATCTCTAAGGCAGAAGATCGGATTGGTGCAACAAGAGCCCGCTCTATTC GCATCTAGCATATTCGAAAACATCGCGTATGGGAAAGAAGGTGCGACGGAAGCTGAGGTCATCGAAGCGGCGCGTGCAGCAAATGTACACGGATTTGTGA GCGCGTTGCCTGACGGGTACAAAACTCCGGTTGGAGAGAGAGGAGTCCAGCTGTCGGGCGGGCAAAAGCAGAGAATAGCGATTGCGAGAGCCGTTCTTAA GGACCCGACGATCCTGTTACTTGATGAAGCTACGAGCGCGCTTGATGCTGAGTCGGAATGTGTGCTGCAAGAAGCACTGGAGAGGCTAATGAGGGGGAGA ACGACGGTGCTGGTGGCGCATAGGTTATCGACAATACGGGGTGTGGATTGTATCGGAGTGGTACAAGACGGGAGGATTGTGGAACAAGGGAGTCACCGGG AGTTGGTTAGCAGGCCTGATGGTGCGTATTCGAGACTGTTGCAGCTACAACACCATCACATTTGA
AA sequence Show only first row Show all	>Lus10030674 pacid=23155241 polypeptide=Lus10030674 locus=Lus10030674.g ID=Lus10030674.BGIv1.0 annot-version=v1.0 MADSSSVPEATKPALPEADKKKEQSLPFHKLFCFADKYDWMLMAFGSLGAIIHGSSMPVFFLLFGEMVNGFGKNQSDLPTMIHEVSKYALYFVYLGLIVC VSSYAEIGCWMYSGERQVSSLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWKLALLSVAVIPGI AFAGGLYAYTLTGLTSKSRESYAQAGIVAEQAIAQVRTVYSYVGETKALNAFSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQ TDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIINQKPTIVQDSLDGKCLDEVTGNIELKNVTFSYPSRPDVVIFRDFSIFFPAGKTVAV VGGSGSGKSTVISLIERFYDPSQGQILLDNVDIKTLQLKWLRDQIGLVNQEPALFATTILENILYGKPDATMDEVEAAASAANAHSFITLLPNGYNTQVG ERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTIAVIQQGQVVETGTHEELIAKAGAYATL IRFQEMVRNREFANPSTRRSRSSRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPKGYFFRLLTLNAPEWPYSIMGAIGSVLSG FIGPTFAIVMSNMIEVFYYKNPQSMERKTKEYVFIYIGAGIYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAA DVKSAIAERISVILQNMTSLLTSFIVAFIIEWRVSLLILGTFPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQDKILSLFCHE LRGPQLHSLKRSQISGLLFGISQLALYASEALILWYGSHLVSRGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGEAVGSVFSILDRSTRIDPDDS EAEPVESIRGEIELRHVDFSYPTRPDVPVFQDFNLRIRAGQSQALVGASGCGKSSVIALIERFYDPSAGKVMIDGKDIRRLNLKSLRQKIGLVQQEPALF ASSIFENIAYGKEGATEAEVIEAARAANVHGFVSALPDGYKTPVGERGVQLSGGQKQRIAIARAVLKDPTILLLDEATSALDAESECVLQEALERLMRGR TTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHRELVSRPDGAYSRLLQLQHHHI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10030674 [exp]	0	1
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10005249 [exp]	1.4	0.8656
AT2G02480		STI	STICHEL, AAA-type ATPase famil...		Lus10042401 [exp]	3.9	0.8802
AT3G15380			Plasma-membrane choline transp...		Lus10036620 [exp]	6.2	0.8463
AT2G30580		BMI1A, DRIP2	DREB2A-interacting protein 2 (...		Lus10033860 [exp]	10.0	0.8422
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10010472 [exp]	15.5	0.8250
AT5G41760			Nucleotide-sugar transporter f...		Lus10036726 [exp]	16.1	0.7930
AT3G22550			Protein of unknown function (D...		Lus10012417 [exp]	16.7	0.8351
AT4G18820			AAA-type ATPase family protein...		Lus10015234 [exp]	19.4	0.8399
AT5G62170			unknown protein		Lus10031666 [exp]	20.3	0.8429
AT5G14620		DMT7, DRM2	domains rearranged methyltrans...		Lus10032136 [exp]	28.6	0.7946

Compare expression of checked genes

Lus10030674 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.