Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39860 54 / 6e-11 bHLH BNQ1, BHLH136, PRE1 PACLOBUTRAZOL RESISTANCE1, BANQUO 1, BASIC HELIX-LOOP-HELIX PROTEIN 136, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT3G28857 53 / 7e-11 bHLH PRE5 Paclobutrazol Resistance 5, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT5G15160 45 / 1e-07 bHLH BNQ2, BHLH134, PRE2 BASIC HELIX-LOOP-HELIX PROTEIN 134, BANQUO 2 (.1) AT1G74500 43 / 7e-07 bHLH TMO7, PRE3, ATBS1, bHLH135 TARGET OF MONOPTEROS 7, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 (.1) AT1G26945 39 / 5e-05 bHLH KDR, PRE6 KIDARI, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005248 [exp] 68 / 8e-17 AT3G28857 57 / 2e-12 Paclobutrazol Resistance 5, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10023610 [exp] 51 / 7e-10 AT3G28857 109 / 9e-33 Paclobutrazol Resistance 5, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10024241 [exp] 51 / 9e-10 AT3G47710 123 / 2e-38 BASIC HELIX-LOOP-HELIX PROTEIN 161, BANQUO 3 (.1) Lus10030490 [exp] 37 / 0.0002 AT3G28857 102 / 4e-30 Paclobutrazol Resistance 5, basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G128400 [exp] 59 / 4e-13 AT5G39860 124 / 8e-39 PACLOBUTRAZOL RESISTANCE1, BANQUO 1, BASIC HELIX-LOOP-HELIX PROTEIN 136, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.017G081300 [exp] 57 / 4e-12 AT5G39860 126 / 1e-39 PACLOBUTRAZOL RESISTANCE1, BANQUO 1, BASIC HELIX-LOOP-HELIX PROTEIN 136, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.012G069500 [exp] 45 / 1e-07 AT1G74500 81 / 2e-21 TARGET OF MONOPTEROS 7, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 (.1) Potri.015G063300 [exp] 44 / 4e-07 AT1G74500 75 / 3e-19 TARGET OF MONOPTEROS 7, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030675 pacid=23155426 polypeptide=Lus10030675 locus=Lus10030675.g ID=Lus10030675.BGIv1.0 annot-version=v1.0 ATGTCAGGCAGGAGAGGCTCATCGAGGCACTCTTCGGGGGTTCCGAGGATAACCGACGACCAGATCATTCAACTCGTCTCCAAGCTTCGCCAACTCCTCC CTGAGATCCGCCAAACCCGCCGCTCCGACAAGGTACTACAATATACCATACTGCATGTCGTTTCTCTCCATCCTCTCCTCTCTAATTACTTTAGCCTAGC TAGCTACAAAATGCCTAGAGCTTCAACATTTTCTTGTGGGTAG
AA sequence Show only first row Show all	>Lus10030675 pacid=23155426 polypeptide=Lus10030675 locus=Lus10030675.g ID=Lus10030675.BGIv1.0 annot-version=v1.0 MSGRRGSSRHSSGVPRITDDQIIQLVSKLRQLLPEIRQTRRSDKVLQYTILHVVSLHPLLSNYFSLASYKMPRASTFSCG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28857	bHLH	PRE5	Paclobutrazol Resistance 5, ba...		Lus10030675 [exp]	0	1
AT1G71760			unknown protein		Lus10004010 [exp]	9.2	0.7830
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10036704 [exp]	14.4	0.7439
AT5G48170		SNE, SLY2	SNEEZY, SLEEPY2, F-box family ...		Lus10006381 [exp]	18.4	0.7783
AT5G62360			Plant invertase/pectin methyle...		Lus10024596 [exp]	26.3	0.7552
AT5G10530			Concanavalin A-like lectin pro...		Lus10007077 [exp]	26.8	0.7422
AT1G03440			Leucine-rich repeat (LRR) fami...		Lus10031601 [exp]	27.6	0.7341
AT5G17430	AP2_ERF	BBM	BABY BOOM, Integrase-type DNA-...		Lus10001185 [exp]	28.8	0.7247
AT2G37690			phosphoribosylaminoimidazole c...		Lus10005526 [exp]	36.2	0.7042
AT1G64600			methyltransferases;copper ion ...		Lus10017311 [exp]	52.4	0.6438
AT3G09290	C2H2ZnF	TAC1	telomerase activator1 (.1)		Lus10040767 [exp]	63.8	0.7152

Compare expression of checked genes

Lus10030675 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.