Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28920 121 / 7e-33 ZF_HD ATHB34, ZHD9 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) AT5G15210 107 / 1e-27 ZF_HD ATHB30, ZFHD3, ZHD8 ZINC FINGER HOMEODOMAIN 8, ZINC FINGER HOMEODOMAIN 3, homeobox protein 30 (.1) AT5G39760 102 / 2e-25 ZF_HD ATHB23, ZHD10 ZINC FINGER HOMEODOMAIN 10, homeobox protein 23 (.1) AT5G65410 85 / 2e-19 ZF_HD ATHB25, ZFHD2, ZHD1 ZINC FINGER HOMEODOMAIN 1, ZINC FINGER HOMEODOMAIN 2, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 25, homeobox protein 25 (.1) AT1G69600 81 / 3e-18 ZF_HD ATHB29, ZFHD1, ZHD11 ZINC FINGER HOMEODOMAIN 11, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 29, zinc finger homeodomain 1 (.1) AT1G75240 81 / 8e-18 ZF_HD ATHB33, ZHD5 zinc-finger homeodomain 5, homeobox protein 33 (.1) AT4G24660 80 / 8e-18 ZF_HD ATHB22, MEE68, ZHD2 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) AT2G02540 79 / 4e-17 ZF_HD ATHB21, ZFHD4, ZHD3 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) AT2G18350 76 / 5e-16 ZF_HD ATHB24, ZHD6 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) AT1G14440 74 / 4e-15 ZF_HD ATHB31, ZHD4 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005242 [exp] 201 / 2e-63 AT5G39760 218 / 9e-69 ZINC FINGER HOMEODOMAIN 10, homeobox protein 23 (.1) Lus10005244 [exp] 196 / 2e-62 AT5G39760 142 / 1e-41 ZINC FINGER HOMEODOMAIN 10, homeobox protein 23 (.1) Lus10010693 [exp] 85 / 1e-20 AT2G02540 104 / 7e-28 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Lus10010694 [exp] 88 / 3e-20 AT2G02540 215 / 5e-68 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Lus10038135 [exp] 87 / 9e-20 AT2G02540 223 / 7e-71 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Lus10026010 [exp] 84 / 7e-19 AT1G75240 172 / 2e-52 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10014302 [exp] 83 / 1e-18 AT1G75240 176 / 9e-54 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10015900 [exp] 82 / 1e-18 AT4G24660 145 / 6e-44 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Lus10007147 [exp] 81 / 2e-17 AT2G18350 222 / 1e-70 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G082900 [exp] 143 / 9e-41 AT3G28920 215 / 8e-68 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) Potri.004G126500 [exp] 138 / 4e-39 AT3G28920 218 / 5e-69 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) Potri.007G024100 [exp] 86 / 2e-19 AT1G75240 186 / 2e-56 zinc-finger homeodomain 5, homeobox protein 33 (.1) Potri.002G102900 [exp] 84 / 3e-19 AT4G24660 209 / 9e-68 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.004G229600 [exp] 84 / 1e-18 AT1G14440 244 / 1e-79 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) Potri.005G158800 [exp] 82 / 1e-18 AT4G24660 204 / 1e-65 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.013G108900 [exp] 82 / 2e-18 AT4G24660 171 / 2e-52 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.004G135100 [exp] 82 / 2e-18 AT2G02540 213 / 4e-68 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Potri.003G000400 [exp] 82 / 3e-18 AT1G14440 238 / 9e-78 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) Potri.005G122500 [exp] 82 / 4e-18 AT2G18350 179 / 2e-54 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04770 [flax] [poplar] ZF-HD_dimer ZF-HD protein dimerisation region
Representative CDS sequence Show only first row Show all	>Lus10030679 pacid=23155188 polypeptide=Lus10030679 locus=Lus10030679.g ID=Lus10030679.BGIv1.0 annot-version=v1.0 ATGCCTTCCCCGAATTCAACCCCCTCAGATCCCACCTCCTTGAGATGCGCCGCCTGTGGCTGCCACCGCAATTTCCACCGCCGTGAGCCGGACGACAACA ACACCAATCAAGCTCCTCCACTACTTCATCCCCCACCACCACCTCCCCCGCCGCAGCTAATCGAGTACCAGCCGCACCACCGCCACCATCCTCTCCCGCC GCCGCTGCCTCCTCACCGCCACCACGAGCAGAGGAGTCCGAATTCCGCATCTCCGCCTCCGATCTCGTCTTCCTACTACCCTTCCGCGCCTCGCATGCTA ATGGCCCTGTCCGGCGAAAACAACAACAACAACAACAAAAACAATAATGTCACAAGGAGCGATCCAGGAGCATCGTCGAGGAAAAGACACAGGACCAAGT TCAGCCAGATCCAGAAGGAGCAGATGTACGAGTTTGCAGAGCGGGTCGGGTGGAAGATGGTGAAGAGCGACGAGGAGCTGGTGAAGGAGTTCTGCAACCA AGTGAAGGTAGACAAAGGGGTTCTCAAAGTCTGGATGCATAACAACAAGAACACTTTCGGCAAGCAGCAGCACCGGGTAATTAGTAGCCATGATCATAAT CATAATGATAATAGTGTTCATCATCATCAGTTGAGCAATAATAATCAGAACAATGGTGATGATCTGATGAATCACAACAACCACCAGCAGAACCAGAATC AGCGTCTGTTTGGGAGTGATAATCATGCTGGGTCATCTTCATCGTCCTAA
AA sequence Show only first row Show all	>Lus10030679 pacid=23155188 polypeptide=Lus10030679 locus=Lus10030679.g ID=Lus10030679.BGIv1.0 annot-version=v1.0 MPSPNSTPSDPTSLRCAACGCHRNFHRREPDDNNTNQAPPLLHPPPPPPPPQLIEYQPHHRHHPLPPPLPPHRHHEQRSPNSASPPPISSSYYPSAPRML MALSGENNNNNNKNNNVTRSDPGASSRKRHRTKFSQIQKEQMYEFAERVGWKMVKSDEELVKEFCNQVKVDKGVLKVWMHNNKNTFGKQQHRVISSHDHN HNDNSVHHHQLSNNNQNNGDDLMNHNNHQQNQNQRLFGSDNHAGSSSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15210	ZF_HD	ATHB30, ZFHD3, ...	ZINC FINGER HOMEODOMAIN 8, ZIN...		Lus10030679 [exp]	0	1
AT4G28570			Long-chain fatty alcohol dehyd...		Lus10024922 [exp]	1.4	0.8826
AT1G21790			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10025673 [exp]	2.0	0.8747
AT5G67350			unknown protein		Lus10019301 [exp]	3.2	0.8634
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10042679 [exp]	4.6	0.8720
AT3G05100			S-adenosyl-L-methionine-depend...		Lus10033850 [exp]	5.5	0.8397
AT1G07090		LSH6	LIGHT SENSITIVE HYPOCOTYLS 6, ...		Lus10038424 [exp]	5.7	0.8667
AT1G07090		LSH6	LIGHT SENSITIVE HYPOCOTYLS 6, ...		Lus10022023 [exp]	8.5	0.8452
AT5G23100			Protein of unknown function, D...		Lus10000863 [exp]	9.4	0.8458
AT5G07700	MYB	ATMYB76	myb domain protein 76 (.1)		Lus10019085 [exp]	9.5	0.8283
AT3G06130			Heavy metal transport/detoxifi...		Lus10021941 [exp]	10.6	0.8477

Compare expression of checked genes

Lus10030679 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.