Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48600 1679 / 0 ATSMC4, SMC4, ATCAP-C, ATSMC3 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) AT3G54670 156 / 3e-38 ATSMC1, TTN8 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) AT3G47460 110 / 5e-24 ATSMC2 Structural maintenance of chromosomes (SMC) family protein (.1) AT5G62410 94 / 5e-19 TTN3, ATSMC4, ATCAP-E1, SMC2 TITAN 3, structural maintenance of chromosomes 2 (.1) AT2G27170 74 / 9e-13 SMC3, TTN7 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2) AT3G28925 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005240 [exp] 2236 / 0 AT5G48600 1804 / 0.0 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) Lus10024895 [exp] 242 / 4e-65 AT3G54670 1604 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10022923 [exp] 240 / 1e-64 AT3G54670 1603 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10021268 [exp] 135 / 5e-32 AT3G54670 849 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10013581 [exp] 92 / 1e-21 AT3G54670 167 / 4e-51 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10027215 [exp] 93 / 8e-19 AT3G47460 1795 / 0.0 Structural maintenance of chromosomes (SMC) family protein (.1) Lus10013583 [exp] 85 / 4e-17 AT3G54670 410 / 2e-133 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10036169 [exp] 87 / 6e-17 AT2G27170 1368 / 0.0 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2) Lus10017012 [exp] 66 / 2e-11 AT3G26770 139 / 2e-39 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G083200 [exp] 1810 / 0 AT5G48600 1737 / 0.0 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) Potri.009G155200 [exp] 106 / 8e-23 AT2G27170 1665 / 0.0 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2) Potri.005G224900 [exp] 100 / 5e-21 AT3G54670 1540 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Potri.001G125000 [exp] 97 / 6e-20 AT5G62410 1771 / 0.0 TITAN 3, structural maintenance of chromosomes 2 (.1) Potri.003G108400 [exp] 67 / 8e-11 AT5G62410 1732 / 0.0 TITAN 3, structural maintenance of chromosomes 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF02463 [flax] [poplar] SMC_N RecF/RecN/SMC N terminal domain CL0023 [flax] [poplar] PF06470 [flax] [poplar] SMC_hinge SMC proteins Flexible Hinge Domain
Representative CDS sequence Show only first row Show all	>Lus10030681 pacid=23155414 polypeptide=Lus10030681 locus=Lus10030681.g ID=Lus10030681.BGIv1.0 annot-version=v1.0 ATGGAATCCGAAGATGAGTTCGTTTCCGGCGAGTCGGAATCCTTCCGATCCCAGAAATCGGCCAGAGCTCCCAGGCTGTTCATCAAAGAAATGGTCATGG CGAACTTCAAGTCCTACGCAGGGGAGCAACGCGTCGGTCCTTTCCATAAGAGTTTCTCTGCAGTAGTAGGACCTAATGGAAGTGGGAAGAGCAACGTTAT TGATGCAATGTTGTTCGTGTTTGGAAAGCGAGCCAAACAGATGAGGCTTAACAAAGTGTCCGAGCTTATTCACAACTCCACCAATCACCAGAATCTGGGC AGTGCTGCTGTTTCTGTGCACTTCCAGGAGATCATTGACCTGGATGATGGTAACTATGAGGCTGTTCCAGGAAGTGATTTTGTGATTAAGAGAGTTGCAC TTCGGGATAACTCTTCTAAGTATTATATCAATGATCGTTTAAGTAATTTTACAGAAGTCACCAAAATGCTGAAAGAGAAGGGAGTCGACCTTGATAACAA CCGTTTTTTGATTCTCCAGGGTGAAGTTGAGCAGATCTCATTGATGAAGCCAAAGGCTCAAGGTCCTCACGATGAAGGTTTTCTTGAATACCTGGAAGAC ATCATTGGCACTAACAAATTTGTGGAGAAAATCGATGAGACATCCAAGGAATCTGGCGTGGTCCAGATGGTGAAGTTAGCTGAGAAAGAAAGAGATGGCT TGGAGGCTGTGAAAAATGAAGCTGAGACATACATGCTTAAAGAGTTATCACACCTGAAATGGCAAGAAAAAGCCTCAAGATTGGCTTTTGAAGATAACTC TACCAAAATGGTTGAAGTGGAAACAAATATAACGGGCCTTGAAGAAAGCCTAAATGCTGACAAAGGGAAAATTCAAGAGAGTCATAAGACACTGAAGGAG CTCGAGACTGTGCATAACAAATACTTGCGAAGACACGAGGAACTGAATGATGATCTCAGAAAATGTAATGACAAATTTAAGGAGTTCGAAAGACAAGATG TCAAATACAGGGAGGATGCTAAACACATGAAGCAAAAGCTCAAGAAACTTGATGATAAGCTTGAAAAGGACTCTTCAAAAATTGAAGACTTGACAAAGGA GTGCGAGGAATCAACAACTTTGATCCCCCGACTGGAGGATACTGTCCCAAAACTGCAAAATCTCTTGTTGCAGGAGGAGAAAGTATTGGAAGACATTATA GAGCGTTCTAAAGGTCAAACTGAGGAGTACCGCTCTGAGCTTGCAAAAGTCCGCGCCGAATTAGAACCATGGGAAAAGCAACTGATTGATCACAAAGGGA GGCTTGAAGTTGCACGTACAGAGAGCAATCTCTTGAGTGAGAAGCATGATGCTGGTCATGCAGCTTTTGAAGATGCACGTAAGCAGATGGAGAGCATACA TGGAACGATTGGAAAAAAAGCAGCAATCATTGGGAAGTTGGAACACGAAATAGAACAAAAGAAGCTTGAAGCATCAGAATCTCGTAAAGAGGAACAGGAA TGCATCAAAGAGCAAGACAGACTGATTCCACTTGAACAAGCTGCGAGGCAGAAGGTTGGAGAATTGAAGTCAATTATTGACTCGGAGAAGAGTCAGGGGT CTGTCCTTAAAGCGATTTTACATGCCAAGGAATCTAAAAGCATAGAGGGAATATATGGAAGAATGGGGGATTTGGGTGCCATTGATGCAAAATATGATGT TGCAATATCCACGGCCTGTTCTGGACTTGACTATATTGTGGTAGAGACAACTGCTGCAGCCCAAGCATGTGTCGAATTGCTAAGAAGGGAGAACCTTGGA ATTGCAACTTTCATGATACTGGATAAACAAAAGCACTTGTCAACAAAAATGAATGAATCTGTGAGCACTCCTGAGGGGGTTCCACGCCTTTTTGACCTGG TGAGGGTGCAGGATAAAAGAATGAGTGTTGCTTTCTATGCTGCATTGGGAAACACTGTTGTAGCAAAGGATCTGGATCAGGCAACACGAATTGCATATGG AGGAAGCACAGACTTCCGTCGCGTGGTTACTCTCGATGGTGCACTTTTTGAAAAGTCTGGTACAATGAGTGGTGGAGGAAGTAAGCCCCGGGGTGGGAAG ATGGGTACATCAGTTCGTGCTGCTACTGTGTCTGCAGAAGCTGTTCTGAATGCAGAAAAGGAACTCTCTACTTTGGTTGAGAACCTGAATGCCATTGGTA AAAAAATCGCTGATGCCGTGAGACGTTACCAAGCATCAGAGAAAGCAGTTTCAGGTTTGGAGATGGAATTGGCTAAAAGCCAGAAAGAGATAGAAAGTTT GAAATCAGAACATAGTTACCTTGATAAGCAACTTTCATCCTTGAAGGCTGCATCACAGCCAAAGAAGGATGAGCTTGATAGATTGAAGGAACTTCAAAAA ATAATATCAGCAGAGGAGAAAGAAATTGATAGCCTTGTGCACGGGTCTAAACAGCTAAAAGAGAAGGCTTTATCTCTTCAGAACAAGATAGAAAATGCTG GTGGGCAGTTGTTGAGGGATCAGAAGTTAAAGGTCAAAAATATTCAATCGGACATTGATAAAAGTTGCTCGGATATCAACCGACATAAAGTGCAAATAGA GACAGCACAAAAAATGATAAAGAAACTCACAAAGGGGATTGAAGATTCAAGGAAGGAAAGGGAACGACTAATTAGTGAAAAGGAAAGGTTCAACGATGTT TTGAAAGATATGACAGCAAAAGCCTTTGATGTTCAAGAGAAGTCTAATAAAATGAAGGAGTTAATTGACGAACATACGAAAGTCTTGGATAAAGCAAGAG AGGAATATGAGCAATTGAAGAAGGTGGTTAATGAGTTACGTGCATCAGAGGTTGACACTGATTTCAAACTGAAAGACCTGAAGAAAGTATACAAGGAGTT GCAAATTAGAGGGAAAGGCTATGCGAAAAAGCTTGATGATTTGCAAAATGCAATCACCCTCCACTTGGAACAAATCGAGAAAGATATGGTCGACCCTGAA AAGCTACAAGCTGCTTTAGCAGACGGGACTCTTTCTGAGGTCACTGACCTGAAGAGGGCCCTTGAAATGGTTACATTACTGGAAGCGCAAATGAAAGAGA TTAATCCCAATCTGGATTCGATCGCAGAGTTGGATGAGTTCATGGTTGGATTCAACGCCATATCCTTAAAGTTAAAAGAGATGTATCAGATGATTACACT GGGAGGTGATGCAGAACTCGAGCTTGTGGATTCTTTGGATCCTTTCTCTGAAGGTGTTGTATTCAGTGTCAGGCCTCCAAAGAAAAGCTGGAAGAACATT GCTAATCTATCTGGTGGCGAAAAGACTCTCAGTTCCTTGGCTCTAGTCTTTGCACTCCACCATTACAAGCCTACACCACTTTACGTGATGGATGAGATTG ATGCCGCGTTAGACTTCAAGAACGTTTCGATCGTTGGGCACTACGTCAAGGACCGCACAAAGGATGCTCAGTTCATCATCATAAGCCTTAGGAACAACAT GTTTGAGTTGGCAGATAGGCTAGTTGGGATATACAAAACCGACAATTGCACAAAGAGTATAACCATTAATCCAGGAAGCTTCGCAGTCTGCGAAAATGCT GCCGCGTCGTAG
AA sequence Show only first row Show all	>Lus10030681 pacid=23155414 polypeptide=Lus10030681 locus=Lus10030681.g ID=Lus10030681.BGIv1.0 annot-version=v1.0 MESEDEFVSGESESFRSQKSARAPRLFIKEMVMANFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNHQNLG SAAVSVHFQEIIDLDDGNYEAVPGSDFVIKRVALRDNSSKYYINDRLSNFTEVTKMLKEKGVDLDNNRFLILQGEVEQISLMKPKAQGPHDEGFLEYLED IIGTNKFVEKIDETSKESGVVQMVKLAEKERDGLEAVKNEAETYMLKELSHLKWQEKASRLAFEDNSTKMVEVETNITGLEESLNADKGKIQESHKTLKE LETVHNKYLRRHEELNDDLRKCNDKFKEFERQDVKYREDAKHMKQKLKKLDDKLEKDSSKIEDLTKECEESTTLIPRLEDTVPKLQNLLLQEEKVLEDII ERSKGQTEEYRSELAKVRAELEPWEKQLIDHKGRLEVARTESNLLSEKHDAGHAAFEDARKQMESIHGTIGKKAAIIGKLEHEIEQKKLEASESRKEEQE CIKEQDRLIPLEQAARQKVGELKSIIDSEKSQGSVLKAILHAKESKSIEGIYGRMGDLGAIDAKYDVAISTACSGLDYIVVETTAAAQACVELLRRENLG IATFMILDKQKHLSTKMNESVSTPEGVPRLFDLVRVQDKRMSVAFYAALGNTVVAKDLDQATRIAYGGSTDFRRVVTLDGALFEKSGTMSGGGSKPRGGK MGTSVRAATVSAEAVLNAEKELSTLVENLNAIGKKIADAVRRYQASEKAVSGLEMELAKSQKEIESLKSEHSYLDKQLSSLKAASQPKKDELDRLKELQK IISAEEKEIDSLVHGSKQLKEKALSLQNKIENAGGQLLRDQKLKVKNIQSDIDKSCSDINRHKVQIETAQKMIKKLTKGIEDSRKERERLISEKERFNDV LKDMTAKAFDVQEKSNKMKELIDEHTKVLDKAREEYEQLKKVVNELRASEVDTDFKLKDLKKVYKELQIRGKGYAKKLDDLQNAITLHLEQIEKDMVDPE KLQAALADGTLSEVTDLKRALEMVTLLEAQMKEINPNLDSIAELDEFMVGFNAISLKLKEMYQMITLGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNI ANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKTDNCTKSITINPGSFAVCENA AAS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48600		ATSMC4, SMC4, A...	ARABIDOPSIS THALIANA STRUCTURA...		Lus10030681 [exp]	0	1
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10035294 [exp]	2.6	0.6845
AT5G57280		RID2	root initiation defective 2, S...		Lus10015533 [exp]	13.3	0.7253
AT5G51230	C2H2ZnF	AtEMF2, CYR1, V...	CYTOKININ RESISTANT 1, EMBRYON...		Lus10032500 [exp]	15.6	0.6703
AT4G04750			Major facilitator superfamily ...		Lus10018957 [exp]	16.4	0.6956
					Lus10026358 [exp]	17.5	0.6512
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029184 [exp]	19.1	0.7142
AT1G32340		NHL8	NDR1/HIN1-like 8 (.1)		Lus10004569 [exp]	19.9	0.6410
AT1G78690			Phospholipid/glycerol acyltran...		Lus10003105 [exp]	19.9	0.5854
AT2G27710			60S acidic ribosomal protein f...		Lus10014070 [exp]	20.7	0.7083
AT5G15240			Transmembrane amino acid trans...		Lus10030683 [exp]	27.0	0.7126

Compare expression of checked genes

Lus10030681 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.