Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23540 238 / 7e-76 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G50400 211 / 2e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G16230 168 / 3e-50 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29670 168 / 5e-49 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29660 167 / 9e-49 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G41890 161 / 2e-46 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G18970 151 / 9e-43 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G71691 152 / 1e-42 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G71250 150 / 3e-42 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45670 149 / 7e-42 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005236 [exp] 461 / 2e-163 AT2G23540 390 / 1e-134 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005238 [exp] 435 / 4e-153 AT2G23540 369 / 2e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016918 [exp] 314 / 2e-105 AT2G23540 381 / 6e-131 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10022471 [exp] 228 / 5e-72 AT2G23540 589 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016775 [exp] 224 / 1e-70 AT2G23540 592 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016929 [exp] 172 / 4e-50 AT1G71691 473 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10011998 [exp] 171 / 4e-50 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002775 [exp] 171 / 7e-50 AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041847 [exp] 160 / 3e-46 AT1G29670 459 / 2e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G104600 [exp] 293 / 2e-97 AT2G23540 370 / 3e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.007G036300 [exp] 222 / 9e-70 AT2G23540 554 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G104700 [exp] 191 / 8e-58 AT2G23540 280 / 1e-91 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G216400 [exp] 178 / 2e-53 AT2G23540 240 / 1e-76 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076500 [exp] 163 / 3e-47 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G102500 [exp] 160 / 5e-46 AT1G71691 481 / 2e-170 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.004G064500 [exp] 160 / 6e-46 AT1G29670 527 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G076600 [exp] 157 / 6e-45 AT1G71691 477 / 5e-169 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.004G086700 [exp] 156 / 1e-44 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.017G130100 [exp] 152 / 3e-43 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10030684 pacid=23155244 polypeptide=Lus10030684 locus=Lus10030684.g ID=Lus10030684.BGIv1.0 annot-version=v1.0 ATGGTTCTTCTTCTTCCCGTCCGAGCTTTCGCAGTACTGGTAATCCTACAGTCACTGGAAATTTGGGTTGCATGCGGCGGAGAAGAAGGTGGTCTAGTAA ACTTTGTATTTGGGGACTCGTTAGTTGATCCTGGAAACGACAATTACATTGCTACCCTTTCCAGGGCAAATTACCCTCCTAATGGGATTGATTTCGAAAC AACAATGGCTCTCCTTTCCGTCGGAGCTTTCACCGTTGTTATAGTACTTGCGGTGGTGTCATCGGAAATCTGGGTGGCCTCCGGTGGTCTAGTAAGCTTT GTCTTTGGGGACTCGTTACTTGATCATGGAAACAACAATTACATTGGTGGTCGGATCAGCATGAATGTTCAAATTGACAACTTCAGCAAAACCAGGGACG AGATCATAGCAATGATTGGTGAAGTGGAAGCTCAGAAGCTGATGGCAAAGGCGATTTTCGCTGTTTCGATTGGATCAAACGACTTCCTTGACAACTACCT TACTCCTGTCCTTTCCATCCCCGAGCGTAAACTCATACCTCCTCAGGTTTTCATGGCGACCATGATCGACACTTTCAGACTTCAACTCACTAAATTGTAC AATTTGGGTGCTCGAAAGTTTGTGGTGGTGAACGTGGTCGTACAACGTAAAGCTAGGACGCTTGTTGAGCAACTTGGCGAAGTCTTCGTCGGGGTTCACC TGGTCCACGCCGACGCTTATAGGATTCTCAATGACATTCTCCTGAGATACGATTCGTACGGTTTTGAGAATGCAGATGGGGCGTGCTGTCACGTGTCTGG GCCACACGGCGGTCTGATTCCGTGCGGTCCGCCGTCGATAGTTTGTGAAAACAGGTCGAAGTATGTGTTTTGGGATCCTTACCATCCGTCCGATGCGACG AATGTTGTCATAGCTAAACGTTTACTGGATGGGGACGTTAATGACATTTCTCCGATGAACGTCCGACAGCTCGCTGCTATTTTGCCGTCGTCCACGTCGA TCGGAAAATACAACTAA
AA sequence Show only first row Show all	>Lus10030684 pacid=23155244 polypeptide=Lus10030684 locus=Lus10030684.g ID=Lus10030684.BGIv1.0 annot-version=v1.0 MVLLLPVRAFAVLVILQSLEIWVACGGEEGGLVNFVFGDSLVDPGNDNYIATLSRANYPPNGIDFETTMALLSVGAFTVVIVLAVVSSEIWVASGGLVSF VFGDSLLDHGNNNYIGGRISMNVQIDNFSKTRDEIIAMIGEVEAQKLMAKAIFAVSIGSNDFLDNYLTPVLSIPERKLIPPQVFMATMIDTFRLQLTKLY NLGARKFVVVNVVVQRKARTLVEQLGEVFVGVHLVHADAYRILNDILLRYDSYGFENADGACCHVSGPHGGLIPCGPPSIVCENRSKYVFWDPYHPSDAT NVVIAKRLLDGDVNDISPMNVRQLAAILPSSTSIGKYN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10030684 [exp]	0	1
AT4G29680			Alkaline-phosphatase-like fami...		Lus10007981 [exp]	1.0	0.9736
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Lus10004313 [exp]	3.9	0.9303
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10028798 [exp]	5.1	0.9312
AT5G52790			CBS domain-containing protein ...		Lus10036040 [exp]	5.3	0.8858
AT3G19950			RING/U-box superfamily protein...		Lus10032265 [exp]	6.4	0.8387
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10037941 [exp]	7.1	0.8132
AT4G02300			Plant invertase/pectin methyle...		Lus10001466 [exp]	11.0	0.9266
AT4G02320			Plant invertase/pectin methyle...		Lus10001467 [exp]	12.2	0.9265
AT4G25640		FFT, ATDTX35	FLOWER FLAVONOID TRANSPORTER, ...		Lus10039263 [exp]	12.7	0.8860
AT2G01690			ARM repeat superfamily protein...		Lus10003679 [exp]	13.2	0.9247

Compare expression of checked genes

Lus10030684 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.