Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28970 250 / 5e-82 AAR3 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1) AT3G12760 95 / 1e-22 unknown protein AT1G15860 42 / 0.0002 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005235 [exp] 540 / 0 AT3G28970 258 / 1e-84 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1) Lus10009599 [exp] 89 / 2e-20 AT3G12760 380 / 3e-135 unknown protein Lus10000875 [exp] 88 / 3e-20 AT3G12760 383 / 3e-136 unknown protein Lus10039198 [exp] 49 / 2e-06 AT1G15860 369 / 2e-131 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10040019 [exp] 48 / 2e-06 AT1G15860 278 / 2e-95 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10013742 [exp] 48 / 6e-06 AT1G15860 367 / 5e-129 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10019598 [exp] 43 / 0.0001 AT1G15860 285 / 4e-98 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10026216 [exp] 41 / 0.0003 AT1G15860 252 / 3e-86 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G122100 [exp] 305 / 3e-103 AT3G28970 296 / 3e-100 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1) Potri.017G084300 [exp] 256 / 3e-85 AT3G28970 269 / 1e-90 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1) Potri.008G083800 [exp] 89 / 2e-20 AT3G12760 415 / 1e-148 unknown protein Potri.003G180300 [exp] 52 / 2e-07 AT1G15860 348 / 6e-123 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Potri.001G047900 [exp] 51 / 3e-07 AT1G15860 328 / 3e-115 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Potri.018G112200 [exp] 47 / 4e-06 AT1G15860 267 / 4e-91 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF03556 [flax] [poplar] Cullin_binding Cullin binding
Representative CDS sequence Show only first row Show all	>Lus10030685 pacid=23155320 polypeptide=Lus10030685 locus=Lus10030685.g ID=Lus10030685.BGIv1.0 annot-version=v1.0 ATGGACTCGTTCGACTCGAATCGGATTGACATCTCCGAGATTTACCTGCGTTATTGTGCTATTAGATCAGGAAATGCGTACCAGGAAGGCAGCAGTTGTC TTGACCATGATGAGCTGCAGAAACTCAAGTTTGCCAGGGATGAATTAGCTGAGCTCTTCACGATTGTTCAGAAGAAGATGCATAAGACACCTAGGTTTTC TATTCTTGATGAACTTCGCAAGCTCATGTCAAATCCAAGGCTGGTGGTTGGTTTACGTGTAGGTTTCTACGACTTCTCATGCTTTTATGATTTTGTATTC TTTATCTGTCGTGAGAACGGTCAAAAGAACACAACTGTAAGCAAGGCGATTACTGCATGGAAGTTGGTATTAGCTGGGAGGTTTAGATTGCTAAACCAAT GGTGTGATTTTGTTGAGCGAAATCAACGGTACAATATTTCTGAGGATACTTGGCGGCAAGTTTTAGCATTTAGTCGATGTGTGCATGAGAATCTTGAAGG CTATGATCCTGAAGGTGCTTGGCCTGTCCTTTTAGATGAATTTGTCGACCATATGTACAGAACATCTGGGTCTAAGAACAATTATACCTCCTCCTTTGAT AGTGGAGATCTGGAATTTCATCTATGTGCTGTTGAAGACCTTCTTCCTGGGCTGAAAGTAACTCCTGGTTTGAAAAGGAAGTCAGGACAAGACAGAATGG AGGTATGTGATCCTGCAGAGGTGAATCTTTCTTCGTCGAATTCGAAGAGAAGTAGAGTAGTGAAGGAGAAGATGTCGTTGAGTTGGGTGGATAACCAGTC GTACGATTCGGGAGATGACGGGATGGATGCAACGAAACAGAATAGTCCGGTCGGGTGTGCGGTTGAGAATTGCTTGTCGAAGGGGTTTGCTGGGGGTTCT TATCTGAAGCTTGAGCAGGAAAGGAGAGTCTCATCTATATAG
AA sequence Show only first row Show all	>Lus10030685 pacid=23155320 polypeptide=Lus10030685 locus=Lus10030685.g ID=Lus10030685.BGIv1.0 annot-version=v1.0 MDSFDSNRIDISEIYLRYCAIRSGNAYQEGSSCLDHDELQKLKFARDELAELFTIVQKKMHKTPRFSILDELRKLMSNPRLVVGLRVGFYDFSCFYDFVF FICRENGQKNTTVSKAITAWKLVLAGRFRLLNQWCDFVERNQRYNISEDTWRQVLAFSRCVHENLEGYDPEGAWPVLLDEFVDHMYRTSGSKNNYTSSFD SGDLEFHLCAVEDLLPGLKVTPGLKRKSGQDRMEVCDPAEVNLSSSNSKRSRVVKEKMSLSWVDNQSYDSGDDGMDATKQNSPVGCAVENCLSKGFAGGS YLKLEQERRVSSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28970		AAR3	antiauxin-resistant 3, Domain ...		Lus10030685 [exp]	0	1
AT3G07440			unknown protein		Lus10020404 [exp]	1.0	0.9534
AT1G72690			unknown protein		Lus10015607 [exp]	1.7	0.9435
AT1G11905			B-cell receptor-associated pro...		Lus10000048 [exp]	4.0	0.9466
AT4G38980			unknown protein		Lus10035474 [exp]	8.7	0.9115
AT4G16850			unknown protein		Lus10019980 [exp]	9.2	0.9173
AT4G17960			unknown protein		Lus10000314 [exp]	13.0	0.9348
AT5G14250		CSN3, FUS11, CO...	FUSCA 11, COP9 SIGNALOSOME SUB...		Lus10014595 [exp]	14.3	0.9161
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10013019 [exp]	14.8	0.9434
AT1G16670			Protein kinase superfamily pro...		Lus10042851 [exp]	14.9	0.9277
AT4G22310			Uncharacterised protein family...		Lus10023745 [exp]	15.7	0.9392

Compare expression of checked genes

Lus10030685 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.