Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01170 140 / 7e-42 Ribosomal protein L34e superfamily protein (.1) AT5G15260 114 / 1e-31 Ribosomal protein L34e superfamily protein (.1) AT3G06180 56 / 1e-09 Ribosomal protein L34e superfamily protein (.1) AT5G19025 56 / 2e-09 Ribosomal protein L34e superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005234 [exp] 160 / 9e-50 AT3G01170 179 / 6e-57 Ribosomal protein L34e superfamily protein (.1) Lus10034022 [exp] 50 / 4e-07 AT5G19020 353 / 7e-114 mitochondrial editing factor 18 (.1) Lus10004432 [exp] 49 / 5e-07 AT3G06180 241 / 3e-80 Ribosomal protein L34e superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G084500 [exp] 182 / 9e-58 AT3G01170 237 / 4e-79 Ribosomal protein L34e superfamily protein (.1) Potri.004G121900 [exp] 176 / 2e-55 AT3G01170 234 / 3e-78 Ribosomal protein L34e superfamily protein (.1) Potri.010G030000 [exp] 51 / 8e-08 AT3G06180 219 / 6e-72 Ribosomal protein L34e superfamily protein (.1) Potri.008G201700 [exp] 50 / 2e-07 AT3G06180 208 / 1e-67 Ribosomal protein L34e superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030686 pacid=23155203 polypeptide=Lus10030686 locus=Lus10030686.g ID=Lus10030686.BGIv1.0 annot-version=v1.0 ATGGTCTATTTCCATAGCTCAATCTCGGTCTGCAACTCCGTTGACCAATCGACAAAGCTCATGGCGAATTCTGTCGGCAATCATCATGTGAACAAGTACA GAAGGGTCGCCAATTGTCTGAACAATTGCTCCTCCTCGTCGACCAGCAACCCTATCTGCGATCGATCTCGATCGTCGGCGGCGGTCGACGTTGCGATCTT CATCGCCGTGGTTTTCGCTTGTGGGTTCTTGCTGTATCCTTACGTCGAGTTTTTGGCAGTCAATTTGATCGATTTCGTTACGGCGGTTCATTGCGTCCTT CAGGATGAGATCGGTAGGAACCCTATGATATACGGATCCATAGGGATCACTACTTTCTGCGCTGCAATCGGTGGCTGGATTGTCCTTCTGTGCACTGCGA GGAAATGTATGAACCCTAATTGTAAAGGTTTGAGAAAAGCAGCGGAATTTGACATTCAGTTGGAGACAGAGGAGTGTGTCAAAGCAGCCTCCAACAATGG CGGCTCGGAGTTTTTTGTGGGGGTTTATCTCAATTTGAGAACTTTGATAGAAGGGTGCTGCTGCTATATGATATACACAGGGATAGTCATGACAGGAATT GCTAAAGGTTACCTTCTTGGATAG
AA sequence Show only first row Show all	>Lus10030686 pacid=23155203 polypeptide=Lus10030686 locus=Lus10030686.g ID=Lus10030686.BGIv1.0 annot-version=v1.0 MVYFHSSISVCNSVDQSTKLMANSVGNHHVNKYRRVANCLNNCSSSSTSNPICDRSRSSAAVDVAIFIAVVFACGFLLYPYVEFLAVNLIDFVTAVHCVL QDEIGRNPMIYGSIGITTFCAAIGGWIVLLCTARKCMNPNCKGLRKAAEFDIQLETEECVKAASNNGGSEFFVGVYLNLRTLIEGCCCYMIYTGIVMTGI AKGYLLG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01170			Ribosomal protein L34e superfa...		Lus10030686 [exp]	0	1
AT4G08230			glycine-rich protein (.1.2)		Lus10041619 [exp]	1.4	0.9225
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10029242 [exp]	2.0	0.9068
AT4G13530			unknown protein		Lus10030342 [exp]	4.2	0.9034
AT2G02870			Galactose oxidase/kelch repeat...		Lus10030489 [exp]	5.1	0.8829
AT5G42300		UBL5	ubiquitin-like protein 5 (.1)		Lus10002228 [exp]	7.4	0.8962
AT1G36310			S-adenosyl-L-methionine-depend...		Lus10023545 [exp]	8.1	0.8930
AT5G56340		ATCRT1	RING/U-box superfamily protein...		Lus10013397 [exp]	8.9	0.8885
AT5G43280		ATDCI1	"delta\(3,5\),delta\(2,4\)-die...		Lus10002583 [exp]	8.9	0.8701
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10019421 [exp]	12.0	0.8876
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10042014 [exp]	13.0	0.8976

Compare expression of checked genes

Lus10030686 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.