Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06900 194 / 4e-58 CYP93D1 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) AT2G42250 141 / 3e-38 CYP712A1 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) AT2G30770 140 / 5e-38 CYP71A13 cytochrome P450, family 71, subfamily A, polypeptide 13 (.1) AT4G13310 138 / 8e-38 CYP71A20 "cytochrome P450, family 71, subfamily A, polypeptide 20", cytochrome P450, family 71, subfamily A, polypeptide 20 (.1.2) AT2G30750 138 / 5e-37 CYP71A12 cytochrome P450, family 71, subfamily A, polypeptide 12 (.1) AT1G11610 137 / 8e-37 CYP71A18 "cytochrome P450, family 71, subfamily A, polypeptide 18", cytochrome P450, family 71, subfamily A, polypeptide 18 (.1.2) AT4G13290 132 / 7e-35 CYP71A19 "cytochrome P450, family 71, subfamily A, polypeptide 19", cytochrome P450, family 71, subfamily A, polypeptide 19 (.1) AT3G48290 125 / 9e-33 CYP71A24 "cytochrome P450, family 71, subfamily A, polypeptide 24", cytochrome P450, family 71, subfamily A, polypeptide 24 (.1.2) AT3G48300 125 / 1e-32 CYP71A23 "cytochrome P450, family 71, subfamily A, polypeptide 23", cytochrome P450, family 71, subfamily A, polypeptide 23 (.1) AT3G20950 124 / 5e-32 CYP705A32 "cytochrome P450, family 705, subfamily A, polypeptide 32", cytochrome P450, family 705, subfamily A, polypeptide 32 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035502 [exp] 311 / 3e-103 AT5G06900 533 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10005878 [exp] 189 / 5e-56 AT5G06900 440 / 1e-150 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10040868 [exp] 180 / 1e-52 AT5G06900 434 / 5e-148 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10013150 [exp] 148 / 9e-41 AT5G07990 403 / 4e-136 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10008112 [exp] 147 / 2e-40 AT5G07990 407 / 2e-137 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10017742 [exp] 134 / 2e-35 AT5G07990 400 / 9e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10030530 [exp] 125 / 1e-33 AT3G48310 191 / 1e-56 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) Lus10041811 [exp] 123 / 1e-31 AT4G36220 667 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10012879 [exp] 123 / 1e-31 AT3G26330 409 / 6e-138 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G049800 [exp] 288 / 3e-94 AT5G06900 536 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.006G058200 [exp] 229 / 2e-71 AT5G06900 584 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.013G027000 [exp] 192 / 3e-57 AT5G06900 357 / 3e-118 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.005G037201 [exp] 186 / 9e-55 AT5G06900 382 / 6e-128 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.005G037100 [exp] 185 / 1e-54 AT5G06900 383 / 4e-128 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.006G190800 [exp] 152 / 4e-42 AT2G42250 509 / 2e-177 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Potri.007G085000 [exp] 149 / 1e-40 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G084700 [exp] 146 / 2e-40 AT5G07990 397 / 5e-134 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.016G052600 [exp] 146 / 5e-40 AT2G42250 512 / 2e-178 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Potri.007G084800 [exp] 145 / 5e-40 AT3G26300 380 / 3e-127 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10030687 pacid=23155294 polypeptide=Lus10030687 locus=Lus10030687.g ID=Lus10030687.BGIv1.0 annot-version=v1.0 ATGTCGCCGGACCCCACTTTCCAATTGTACGCCGCAATCACCCTCCTGGTATGTCTAGTCACCACCGCCGCGATCATAATAATCAAGACCCTCGCCGGCA TATCCCGACCTGCCGGCCCACACCCGCCTCGGCCGCCGGCACTCCCAATCATAGGCCACCTCCACCTCCTTTCCCCGATCCCACACCAAGCCCTTTACAG GCTATCCCTCCGCCACGGCCCACTCTTCCGCATCTCCCTCGGCTCCGTCCCGTGCGTCGTCGCTTCGTCGCCGGAGGCCGCCAGAGAATTCCTCAAAACC CACGACTCTGCCTTCTCGGACAAGCCGGTCTCCGCCGCCGTCGACTACCTCACCTACGGCTCCGCTGACTTCGCATTCGCCCCTGACGGGCCTTACTGGA AATTCGTCAAGAGGCTGTGCATGTCGGAGCTCCTCGGCGGACGGGTCCTGGACCGGACGGCCCCACTGAGGTCGGACGAGATCCGCCGGTTCGTCGAAGG GATCCGAAGCAGAGCGGAAGCAGGGGAGGCGGTCGAGGTGGGAGGCGAGCTGATTCGGCTGACGAACAACGTAGTTTCGAGGATGGTGATGAGCGAGAGG TGCTCCGGGGGTGGAGACACGGAGGCCGGCGAGGTTAGGAAGGTGATTCAGGAGACGGGGAAGCTGGCTGGAGAGTTCAACTTGGGGGATTTCGTGTGGG GGTTGAAGGGTTTGGATTTGCAAGGGTTTGGGAAGAGAATGAAGTGCGTTAGGGAGAAGTTTGATTGCATGATGGAGAGGATCATACATGAACATGAGGA TGCCAGAGAGATCAGCATGATGAAGAGAGAGAGATCAGATGAAGTGGTAGTAGTGGCGGCGGCTGCGGCGGTGGTGATCAGGAGGAGGGGAAGGACTTGC TAG
AA sequence Show only first row Show all	>Lus10030687 pacid=23155294 polypeptide=Lus10030687 locus=Lus10030687.g ID=Lus10030687.BGIv1.0 annot-version=v1.0 MSPDPTFQLYAAITLLVCLVTTAAIIIIKTLAGISRPAGPHPPRPPALPIIGHLHLLSPIPHQALYRLSLRHGPLFRISLGSVPCVVASSPEAAREFLKT HDSAFSDKPVSAAVDYLTYGSADFAFAPDGPYWKFVKRLCMSELLGGRVLDRTAPLRSDEIRRFVEGIRSRAEAGEAVEVGGELIRLTNNVVSRMVMSER CSGGGDTEAGEVRKVIQETGKLAGEFNLGDFVWGLKGLDLQGFGKRMKCVREKFDCMMERIIHEHEDAREISMMKRERSDEVVVVAAAAAVVIRRRGRTC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10030687 [exp]	0	1
AT2G24190		SDR2	short-chain dehydrogenase/redu...		Lus10008413 [exp]	46.1	0.6217
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10015076 [exp]	57.3	0.6596
AT3G22490			Seed maturation protein (.1)		Lus10015948 [exp]	63.5	0.6507
AT4G22200		AKT3, AKT2/3	potassium transport 2/3 (.1)		Lus10003644 [exp]	68.8	0.6243
AT2G46950		CYP709B2	"cytochrome P450, family 709, ...		Lus10019186 [exp]	125.4	0.6387
AT2G01170		BAT1	bidirectional amino acid trans...		Lus10028561 [exp]	134.2	0.6315

Compare expression of checked genes

Lus10030687 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.