Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01150 550 / 0 ATPTB1, PTB polypyrimidine tract-binding protein 1 (.1.2) AT5G53180 506 / 8e-179 ATPTB2 polypyrimidine tract-binding protein 2 (.1.2) AT1G43190 130 / 2e-33 PTB3 polypyrimidine tract-binding protein 3 (.1.2.3) AT4G19610 44 / 0.0002 nucleotide binding;nucleic acid binding;RNA binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005233 [exp] 819 / 0 AT3G01150 598 / 0.0 polypyrimidine tract-binding protein 1 (.1.2) Lus10014931 [exp] 499 / 2e-175 AT5G53180 617 / 0.0 polypyrimidine tract-binding protein 2 (.1.2) Lus10038820 [exp] 466 / 4e-163 AT5G53180 567 / 0.0 polypyrimidine tract-binding protein 2 (.1.2) Lus10028566 [exp] 87 / 3e-18 AT1G43190 678 / 0.0 polypyrimidine tract-binding protein 3 (.1.2.3) Lus10018871 [exp] 82 / 9e-17 AT1G43190 680 / 0.0 polypyrimidine tract-binding protein 3 (.1.2.3) Lus10043204 [exp] 44 / 0.0003 AT5G61960 728 / 0.0 MEI2-like protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G085400 [exp] 610 / 0 AT3G01150 607 / 0.0 polypyrimidine tract-binding protein 1 (.1.2) Potri.004G123300 [exp] 605 / 0 AT3G01150 636 / 0.0 polypyrimidine tract-binding protein 1 (.1.2) Potri.012G029300 [exp] 510 / 2e-180 AT5G53180 603 / 0.0 polypyrimidine tract-binding protein 2 (.1.2) Potri.015G020800 [exp] 493 / 1e-173 AT5G53180 581 / 0.0 polypyrimidine tract-binding protein 2 (.1.2) Potri.002G066000 [exp] 128 / 1e-32 AT1G43190 726 / 0.0 polypyrimidine tract-binding protein 3 (.1.2.3) Potri.005G194700 [exp] 127 / 3e-32 AT1G43190 745 / 0.0 polypyrimidine tract-binding protein 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10030688 pacid=23155256 polypeptide=Lus10030688 locus=Lus10030688.g ID=Lus10030688.BGIv1.0 annot-version=v1.0 ATGTCAACATCCGGACCTCCCCAATTCCGATACACCCAAACTCCATCCAAGGTTCTTCATTTGCGTAACCTGCCATGGGAGTGTTCTGAAGAAGAGCTCG TCGAGCTCTGTAAACCATTTGGAAAGATCGTAAACACCAAGTCCAATGTTGGCGCCAATCGCAATCAAGCCTTCGTCGAATTCGCGGACCCAAACCAGGC GATTCAAATGGTTTCCTACTATGCATCATCTTCTGATCCTGCACAAGTTCGTGGCAAAGCTGTTTATATACAGTATTCAAACAGACATGAGATTGTCAAC AACAAGGCTCCAGCTGATAATCCCGGTAATGTGTTACTGGTGACTATAGAAGGGGTAGAAGCTGGTGATGTCAGCATTGATGTTATTCACTTGGTTTTCT CAGCTTTTGGCTTTGTACACAAAATTGCTACTTTCGAAAAAGCTGCTGGCTTTCAGGCTTTGATTCAATTCACTGATGCAGAGACAGCATCTTCAGCAAG GGATGCATTAGATGGCAGAAGTATACCTAGGCATGTGTACTTGCTCCCAGATCATGTTGATTCATGTAACTTGCGTATTTCATACTCTGCCCATGTTGAT CTGAATATCAAGTTCCAGTCTCACAGGAGCAGCTGCCATCTTCAGCTTGCTGTAGGTCCCGATGGAAAAAGGAAAGAACCGGAGAGTAATGTCCTACTTG CATCGATAGAGAATATGCAATATGCCGTCACTCTAGATGTTTTTCACACTGTGTTTTCAGCTTTTGGTAACGTTCAGAAGATTGCAATATTTGAGAAAAA TGGTAGTACTCAGGCACTGATTCAGTATCCAGACGTTGCAACAGCAACTTCAGCAAAAGATGCTTTAGAGGGACACTGCATTTATGATGGTGGCTATTGT AAGCTTCATCTATCATACTCTCGTCATACTGATCTCAATGTAAAGGCGTACAGTGATAAGAGCAGAGACTATACAATTCCGGATGCAAGTTCGGCTGCAG CATCATCACAGCAGCATTATCAGGCCGGTCCAGTGTATACTGCAAATGCATATGCACCTGGTGCGGCACCTCAAGCCTCGACCGGCCAAATGGCTGGTCC AGGACCGGTCCACGGACATGAAGCATCGCCATATCCACAGCATCCTCACATGCCTCCGTATGGCACTGCTGGTCCCGAGCCGCCTGGTACTCAGGGCGGT CCAGCTTTTCGTGGATCGGCTTCTGGCGGAGGCCATCTAAATATGCGGCCCGGTGATGCTCCACCTCCAGGCCAGCATCCTTATTACAGTGGATGA
AA sequence Show only first row Show all	>Lus10030688 pacid=23155256 polypeptide=Lus10030688 locus=Lus10030688.g ID=Lus10030688.BGIv1.0 annot-version=v1.0 MSTSGPPQFRYTQTPSKVLHLRNLPWECSEEELVELCKPFGKIVNTKSNVGANRNQAFVEFADPNQAIQMVSYYASSSDPAQVRGKAVYIQYSNRHEIVN NKAPADNPGNVLLVTIEGVEAGDVSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARDALDGRSIPRHVYLLPDHVDSCNLRISYSAHVD LNIKFQSHRSSCHLQLAVGPDGKRKEPESNVLLASIENMQYAVTLDVFHTVFSAFGNVQKIAIFEKNGSTQALIQYPDVATATSAKDALEGHCIYDGGYC KLHLSYSRHTDLNVKAYSDKSRDYTIPDASSAAASSQQHYQAGPVYTANAYAPGAAPQASTGQMAGPGPVHGHEASPYPQHPHMPPYGTAGPEPPGTQGG PAFRGSASGGGHLNMRPGDAPPPGQHPYYSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01150		ATPTB1, PTB	polypyrimidine tract-binding p...		Lus10030688 [exp]	0	1
AT1G07705			NOT2 / NOT3 / NOT5 family (.1....		Lus10040875 [exp]	4.5	0.8586
AT3G09180			unknown protein		Lus10021276 [exp]	5.2	0.8064
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10016716 [exp]	5.7	0.8920
AT4G02680		EOL1	ETO1-like 1 (.1)		Lus10022084 [exp]	7.7	0.8477
AT3G21430	MYB	ATALY3	ARABIDOPSIS THALIANA ALWAYS EA...		Lus10002879 [exp]	9.6	0.8644
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10036010 [exp]	11.0	0.8645
AT1G14570			UBX domain-containing protein ...		Lus10039137 [exp]	11.5	0.8024
AT1G22800			S-adenosyl-L-methionine-depend...		Lus10033838 [exp]	12.0	0.8301
AT1G15240			Phox-associated domain;Phox-li...		Lus10025785 [exp]	12.6	0.8581
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Lus10032785 [exp]	13.8	0.8313

Compare expression of checked genes

Lus10030688 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.