Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15270 562 / 0 RNA-binding KH domain-containing protein (.1.2) AT1G14170 360 / 2e-119 RNA-binding KH domain-containing protein (.1.2.3) AT5G46190 174 / 2e-47 RNA-binding KH domain-containing protein (.1) AT4G18375 168 / 1e-45 RNA-binding KH domain-containing protein (.1.2) AT1G51580 154 / 4e-40 RNA-binding KH domain-containing protein (.1) AT5G53060 151 / 4e-39 RNA-binding KH domain-containing protein (.1.2) AT2G03110 133 / 1e-36 RNA binding;nucleic acid binding (.1) AT5G64390 98 / 3e-21 HEN4 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) AT5G09560 88 / 5e-18 RNA-binding KH domain-containing protein (.1) AT3G04610 79 / 2e-15 FLK flowering locus KH domain, RNA-binding KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005232 [exp] 879 / 0 AT5G15270 634 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10037163 [exp] 427 / 3e-143 AT5G15270 491 / 1e-167 RNA-binding KH domain-containing protein (.1.2) Lus10036767 [exp] 419 / 1e-140 AT5G15270 483 / 2e-165 RNA-binding KH domain-containing protein (.1.2) Lus10038509 [exp] 189 / 1e-52 AT5G46190 653 / 0.0 RNA-binding KH domain-containing protein (.1) Lus10023300 [exp] 189 / 2e-52 AT5G46190 643 / 0.0 RNA-binding KH domain-containing protein (.1) Lus10028237 [exp] 162 / 1e-42 AT5G64390 243 / 8e-71 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10035640 [exp] 156 / 1e-40 AT5G64390 337 / 8e-104 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10007236 [exp] 155 / 3e-40 AT5G64390 249 / 6e-73 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10010754 [exp] 152 / 4e-39 AT5G64390 311 / 5e-94 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G085500 [exp] 652 / 0 AT5G15270 592 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.004G123400 [exp] 635 / 0 AT5G15270 596 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.008G088600 [exp] 471 / 1e-161 AT5G15270 454 / 5e-155 RNA-binding KH domain-containing protein (.1.2) Potri.010G167100 [exp] 464 / 4e-159 AT5G15270 455 / 3e-155 RNA-binding KH domain-containing protein (.1.2) Potri.017G114400 [exp] 277 / 1e-84 AT5G15270 259 / 8e-78 RNA-binding KH domain-containing protein (.1.2) Potri.002G112200 [exp] 187 / 1e-51 AT5G53060 243 / 7e-71 RNA-binding KH domain-containing protein (.1.2) Potri.004G066100 [exp] 183 / 1e-50 AT4G18375 558 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.015G011100 [exp] 176 / 8e-48 AT5G53060 699 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.012G017200 [exp] 168 / 5e-45 AT5G53060 656 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.011G082500 [exp] 167 / 9e-45 AT5G46190 525 / 5e-180 RNA-binding KH domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [flax] [poplar] KH PF00013 [flax] [poplar] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Lus10030689 pacid=23155307 polypeptide=Lus10030689 locus=Lus10030689.g ID=Lus10030689.BGIv1.0 annot-version=v1.0 ATGGCTGGTCAAAGGAGCAGTCATGGGAAGCGGTCTCATTCTCACTCTGAATATGATAATGGATCCAACAAAAGAAGGAGCTCAGGTGAAGATAGAGGAG ACCCTTTTGTCATCGATGCTCGGGATACTGTGTACCGGTACCTGTGTCCTGGCCGAAAGATTGGAAGCATAATTGGAAGAGGAGGTGATATTATCAAACA GCTAAGGATAGACACCAAGTCGAAGATTAGAATCGGTGAGACAATCCGAAGCTGTGATGATCGCGTGGTTACCATCTACAGTTCAAGCGACGAGACTAAT ACATACGAAGATTCGGGTGATGAGATTTCACCTGCTCAAGATGCTCTTTTCCGGGTCCATGATAAAGTTGTTGCAGACGATTTGCATGGTGGTGAAGACA CTGTAAGTGGTCCGCAAGTAACTGCAAGACTTCTTGTTCCCTCTGATCAGATAGGGTCCATTATTGGGAAAGCCGGAGTGATTGTGCAAAATATCCGTAC TGAAACTGGTACGCAGATCCGCATTTTGAAGGACGACCATTTGCCACTCTGTGCGCTAAGCTCCGATGAACTTGTACAGATTTCTGGTGAAGCGGCATCA GTCAAGCAGGCATTATACAAAATTGCTTTTCGGCTCCATGAAAATCCGTCACGGTCTCAGCACTTGCTTTCGTCTGCTGTCCCTAACATGTATTCTTCGG GTGGTTCACTGATGGGTCCTACTGCAGGACCACAGTTTGTGGGAATAGCTCCAATAGTGAGTTCTTATGGAGGATATAAAAACGATGTCAGAGATTGGTC ACAGCCTATGTACTCTACACAGAGAGAGGAACTTCCGCCTAGAGAATTTTCTCTTCGTATGGTTTGTCCAGCTGCATATATAGGTGGCGTGATTGGAAAA GGAGGTGCCATTATTAATCAAATCAGGCAAGATTCTGGAGCAGGTATTAAGGTTGATAGCTCAGCTGCTGATGGAGATGAATGCTTGATAATAATTTCAG CTAGGGAGGTGTTTGAAGAGCAATATTCACCAACAATTGAAGCAGCATTGAGGTTGCAACCTAGATGTAGTGAGAGAACGGAAAGAGATTCTGGACTTAT CTCCTATACTACCCGGCTGCTTGTACCTTCTTCAAGGATTGGATGTCTTCTCGGTAAGGGTGGAGCAATCATCAATGAGATGAGGCAGCAAACAAAAGCA ACTATACGTATCCTTGGAAAGGAAGATGTTCCAAAAGTTGCAGGAAAGGATGAGGAGATGGTGCAGATCTCGGGGGACCTTGATGTTGCCAAAGATGCAC TGATACAAATAAGTCAAAGGTTAAGAGCGAATGTCTTTGACAGAGAAGGTGCAACCTCTGCTTTTTTGCCCGTGCTACCGTATGTTCCTGTTTCAGCCGA TGGTCCGGATAACCTAAATTATGACAGCAGAGATGGTAGAAGGGTTGGCCGCGGCTATTCATTATCTGGTGGTTACCCTTTAAGTGATTATAGTTCTAGT GACACATATGGTAGCTACAGTAATTCTCAGATTGGTGGTAGTGGTGCTCCATATGGGGCCTACGGAAGTTATTCTTCTGGACGTACAAGCTCTTCTGGGT AA
AA sequence Show only first row Show all	>Lus10030689 pacid=23155307 polypeptide=Lus10030689 locus=Lus10030689.g ID=Lus10030689.BGIv1.0 annot-version=v1.0 MAGQRSSHGKRSHSHSEYDNGSNKRRSSGEDRGDPFVIDARDTVYRYLCPGRKIGSIIGRGGDIIKQLRIDTKSKIRIGETIRSCDDRVVTIYSSSDETN TYEDSGDEISPAQDALFRVHDKVVADDLHGGEDTVSGPQVTARLLVPSDQIGSIIGKAGVIVQNIRTETGTQIRILKDDHLPLCALSSDELVQISGEAAS VKQALYKIAFRLHENPSRSQHLLSSAVPNMYSSGGSLMGPTAGPQFVGIAPIVSSYGGYKNDVRDWSQPMYSTQREELPPREFSLRMVCPAAYIGGVIGK GGAIINQIRQDSGAGIKVDSSAADGDECLIIISAREVFEEQYSPTIEAALRLQPRCSERTERDSGLISYTTRLLVPSSRIGCLLGKGGAIINEMRQQTKA TIRILGKEDVPKVAGKDEEMVQISGDLDVAKDALIQISQRLRANVFDREGATSAFLPVLPYVPVSADGPDNLNYDSRDGRRVGRGYSLSGGYPLSDYSSS DTYGSYSNSQIGGSGAPYGAYGSYSSGRTSSSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15270			RNA-binding KH domain-containi...		Lus10030689 [exp]	0	1
AT4G05420		DDB1A	damaged DNA binding protein 1A...		Lus10033455 [exp]	1.4	0.8996
AT5G07940			unknown protein		Lus10021621 [exp]	2.4	0.9036
AT3G50430			unknown protein		Lus10022468 [exp]	7.5	0.8527
AT4G19210		ABCE2, ATRLI2	ARABIDOPSIS THALIANA RNASE L I...		Lus10034771 [exp]	8.1	0.8459
AT2G40700			P-loop containing nucleoside t...		Lus10012874 [exp]	13.3	0.8268
AT1G56310			Polynucleotidyl transferase, r...		Lus10031402 [exp]	14.7	0.8105
AT2G24530			unknown protein		Lus10026225 [exp]	16.2	0.8039
AT2G40700			P-loop containing nucleoside t...		Lus10030523 [exp]	18.7	0.8460
AT5G58003		CPL4	C-terminal domain phosphatase-...		Lus10036277 [exp]	19.8	0.8234
AT5G39350			Tetratricopeptide repeat (TPR)...		Lus10013176 [exp]	20.5	0.8349

Compare expression of checked genes

Lus10030689 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.