Plant FIBer expression Database

Lus10030691 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G01755 117 / 2e-33 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005230
[exp]
227 / 5e-77 AT2G01755 120 / 1e-34 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G135400
[exp]
142 / 3e-43 AT2G01755 127 / 1e-37 unknown protein
PFAM info
Representative CDS sequence
>Lus10030691 pacid=23155366 polypeptide=Lus10030691 locus=Lus10030691.g ID=Lus10030691.BGIv1.0 annot-version=v1.0
ATGTTGCTGAAACCAGCAGCAGCAGCAGCTAATGATTTCCTACCACAGCTCAAACACCACCTCCCACCATTCCAAATTACTACTACTCATCGCCGTCCCT
TGTTATTATCATTAAACAGATCATCGAATCCTTATACTACTGTTGCATTTGCCGCAGCCAGAAGAAGAACCAGATGGGTGGAGGACGAGGATGAAGAAGA
AGAAGGAGAAGAGGAAGAATACAATAAAGATATAGCATTGCTGGAACTCTACACTCAAACTTCCAGAGGAGAAGCACTCATTGTCCATGCTTCTGTGGAC
GACGACCCTCCTGCCGAAGTTCTCATCTTCAGGGGTTTCTCGTCGTGCTTAAGCTACGGGACGGCAGCAGATCCAACAAAGAGTGTGATTCCGGCGAGGT
CAGTGATAAAATCAGTGGACAGAATCATGGGACCATTTGATCCTTCAAACGTTCACTACTTGGAGAAGGACATCACCTGGGATTCGTTCAAGTCCCGCCT
TCCCTCGACTGCTGGTTGA
AA sequence
>Lus10030691 pacid=23155366 polypeptide=Lus10030691 locus=Lus10030691.g ID=Lus10030691.BGIv1.0 annot-version=v1.0
MLLKPAAAAANDFLPQLKHHLPPFQITTTHRRPLLLSLNRSSNPYTTVAFAAARRRTRWVEDEDEEEEGEEEEYNKDIALLELYTQTSRGEALIVHASVD
DDPPAEVLIFRGFSSCLSYGTAADPTKSVIPARSVIKSVDRIMGPFDPSNVHYLEKDITWDSFKSRLPSTAG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G01755 unknown protein Lus10030691
[exp]
0 1
AT2G01918 PQL3 PsbQ-like 3 (.1) Lus10004054
[exp]
2.8 0.9639
AT2G38140 PSRP4 plastid-specific ribosomal pro... Lus10002497
[exp]
5.1 0.9582
AT3G63190 HFP108, AtcpRRF... "ribosome recycling factor, ch... Lus10042587
[exp]
8.8 0.9491
AT2G30695 unknown protein Lus10008364
[exp]
9.6 0.9484
AT3G10405 unknown protein Lus10037959
[exp]
11.6 0.9437
AT2G32180 PTAC18 plastid transcriptionally acti... Lus10030017
[exp]
12.0 0.9343
AT1G23070 Protein of unknown function (D... Lus10036614
[exp]
13.5 0.9403
AT2G42220 Rhodanese/Cell cycle control p... Lus10021032
[exp]
14.4 0.9447
AT2G42220 Rhodanese/Cell cycle control p... Lus10023820
[exp]
14.5 0.9476
AT5G14910 Heavy metal transport/detoxifi... Lus10032167
[exp]
14.7 0.9449

Lus10030691 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.