Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39420 548 / 0 CDC2CAT CDC2C (.1) AT3G01085 494 / 1e-166 Protein kinase superfamily protein (.1) AT1G18670 494 / 1e-165 IBS1 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) AT1G74330 482 / 5e-161 Protein kinase superfamily protein (.1.2) AT1G71530 434 / 1e-145 Protein kinase superfamily protein (.1.2) AT5G50860 436 / 7e-145 Protein kinase superfamily protein (.1) AT1G54610 429 / 3e-142 Protein kinase superfamily protein (.1.2.3) AT1G53050 431 / 4e-141 Protein kinase superfamily protein (.1) AT1G09600 423 / 5e-138 Protein kinase superfamily protein (.1) AT4G10010 409 / 5e-136 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005228 [exp] 1009 / 0 AT5G39420 537 / 0.0 CDC2C (.1) Lus10015727 [exp] 528 / 1e-178 AT1G18670 884 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Lus10034726 [exp] 483 / 1e-161 AT1G18670 782 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Lus10021642 [exp] 481 / 5e-157 AT1G18670 736 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Lus10012805 [exp] 450 / 3e-150 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033975 [exp] 443 / 1e-147 AT1G54610 762 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001715 [exp] 442 / 5e-147 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10004144 [exp] 445 / 2e-146 AT1G54610 803 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10035892 [exp] 432 / 6e-143 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G088200 [exp] 615 / 0 AT5G39420 647 / 0.0 CDC2C (.1) Potri.015G061400 [exp] 515 / 5e-174 AT1G18670 846 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Potri.012G067800 [exp] 512 / 6e-173 AT1G18670 878 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Potri.008G204400 [exp] 458 / 6e-154 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G032200 [exp] 458 / 2e-153 AT1G54610 787 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G045500 [exp] 458 / 3e-153 AT1G54610 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.015G103300 [exp] 447 / 7e-149 AT5G50860 716 / 0.0 Protein kinase superfamily protein (.1) Potri.012G103900 [exp] 446 / 2e-148 AT5G50860 709 / 0.0 Protein kinase superfamily protein (.1) Potri.004G226900 [exp] 441 / 8e-145 AT1G09600 731 / 0.0 Protein kinase superfamily protein (.1) Potri.001G399700 [exp] 438 / 8e-144 AT1G53050 1006 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10030692 pacid=23155177 polypeptide=Lus10030692 locus=Lus10030692.g ID=Lus10030692.BGIv1.0 annot-version=v1.0 ATGGGCTGCGTCAACTCCAAACGGGCTATCTCCTCCGTCTCCGGCGGCGAATCCCCCGTTCTCAATTACCCTTCCTATTCCGCCGTCGCCGATGTAAATG ACGATTCCCGCCACCAGCTCTCCTTCGTCGACCCTAACTCCGGCGTTTCTTCCCGTAACCCCTCCGGCCACCTCCTTCCGCATCCGAGTCATCCCCCCGC CGCCGACGAGCTCAAACAACGGTCCAGGAAGGGTAGCAGAAGCGGCAGCGGGAAAATAAAAAAGGTCGGCGATCTTCTAGATGCGAGCGGGAAGATTAAA GAGGAAGAGGAAAAGGTTGTTAGGGAAATTCAAAATCAGACCGACCAGAAGAAGTTGGAGAGGAGGGCGTCGGTTCTGGAAATCGGAGCGATTAGCGTGT TGAAATGCGACGTTGTTGTTCAAACGCAAACGCCGCCGCCTCCGCGGCGGCATGTTGCGGCGGGGCGGAGCTGCGCCGGGTGGCCGGCCCGGCTCCCCCT CGGCCCCGCGGGGGGGGTCGACAGGCCTGGGGGGGGAACGGCTGGGTCCCTTGCCAGGCCGATGCTTATGAGAAATTGGAAAAGCAGTGTGTTCCGAGCA AGGGAGGTGGAGACGGGGAGGATGGTGGCACTGAAAAAAGTGAGGTTTGACAATTTCCAGCCGGAGAGCATTCGGTTCATGGCGAGAGAGATATTGATTC TCCGGCGACTTGACCACCCTAATATCATGAAGTTGGATGGGATCATCACTTCTCGATTGTCCAGTAGCATTTATCTTGTGTTTGAGTATATGGAGCATGA TCTTGCTGGGTTATCTTCTTCCCCTGACATCAACTTGACCCAACCTCAGGTGAAGTGTTACATGAAGCAGCTACTCCGTGCAACAGAGCACTGCCATCTA AGAGGGGTAATGCACAGAGACATCAAGATGTCAAACATCTTGGTAAACAATCAAGGAGTCCTGAAGCTAGGCGATTTCGGCCTAGCAAACATCCTCGCCT CCAAAGGGAAACAGAGGCTCACCAGCCGCGTGGTGACCCTCTGGTATCGCCCTCCGGAGCTTCTACTCGGTTCTACCACTTACGGAGTTTCTGTAGACCT TTGGAGCGTGGGATGCGTATTCGCAGAACTCCTGATAGGAAAACCACTCCTGAAAGGCAGGACGGAGGTTGAGCAGCTTCACAAGATCTTCAAGCTTTGT GGTTCCCCTCCTGACGAGTTTTGGAAGCAGTATAACCTTCCCAATGCCACCATGTTTAGACCTCAGCATCCTTACGAGAGCTCTTTAAGGGAGAGGTGCA AGGATTTCCCTCCGGCCGCTACCGAGTTGATAGAGACATTGCTCTCCATTGACCCGGAAAAGCGTGGGTCCGCCTCTTCTGGCCTTATGTCTCGGTACAT CAATTCGAAGCCGTATGCTTGTGAACCGTCGAGCTTGCCAAAGTACCCACCAAACAAAGAAATGGATGCCAAATATAGAGAGGACTCAAGAAGGAAGAGA AACGGAGTGAAGGCGCGAGAATTGGGAGTTAAGCGGCCGAAAGGAACCCTTAGGGGAAGCAGCTTCAACAAAATTGGTCCGAAAGAGGAGTGGAAGGAGA ACACCAACACATCGTTCGGTCCTAAGGCGAACGACAACAATAAAAATGCGAGCCAAGCAAGAGAAGCAGCAGCCGCAATTCGTAGAGAGCTCAACTGGAA TACAAGCACGGCCGTACTACCAACAGGGCTGCAAATGCCAAAAGGTGACCACCAGCCTTATACTGATGGTCCTCCTGCACCTGCAATCACTGCATCAAGC GGCTTTGCATGGACGAAAAAGCAAAAAGATGATCTCTTGACCACATTGTCGTATGATAGCAATGAGAGTCAAGTTAGCGGACTTGATGCACCATTCAAGT TCCCCAACTTGAATGCAGGACTTGAAGGAAAGCACAGTCACCACAAGGACTCCATATCGTTGCAGCAGCAGCAGCAGCAGAATCGTGTCGATGCACCATC TTCAGATTCGCTTAAAACATTTTTATCGTACGTGATAGCAGACGATATTCCTATGAGCAACAGTCGGGAGTTCATTGAGCAATCGGGAAAGGTCGAATTC TCAGGACCACTGTTGTCACAGTCTAACAAAGTTGCGCAGTCGAATCAGATCGGAGCATTGTTGCAAAAGAACGAGAATCAGATACGAAGAGCAGCCAGAA CATCGAGGTTGGATACAGGTAATGGCTGCTAG
AA sequence Show only first row Show all	>Lus10030692 pacid=23155177 polypeptide=Lus10030692 locus=Lus10030692.g ID=Lus10030692.BGIv1.0 annot-version=v1.0 MGCVNSKRAISSVSGGESPVLNYPSYSAVADVNDDSRHQLSFVDPNSGVSSRNPSGHLLPHPSHPPAADELKQRSRKGSRSGSGKIKKVGDLLDASGKIK EEEEKVVREIQNQTDQKKLERRASVLEIGAISVLKCDVVVQTQTPPPPRRHVAAGRSCAGWPARLPLGPAGGVDRPGGGTAGSLARPMLMRNWKSSVFRA REVETGRMVALKKVRFDNFQPESIRFMAREILILRRLDHPNIMKLDGIITSRLSSSIYLVFEYMEHDLAGLSSSPDINLTQPQVKCYMKQLLRATEHCHL RGVMHRDIKMSNILVNNQGVLKLGDFGLANILASKGKQRLTSRVVTLWYRPPELLLGSTTYGVSVDLWSVGCVFAELLIGKPLLKGRTEVEQLHKIFKLC GSPPDEFWKQYNLPNATMFRPQHPYESSLRERCKDFPPAATELIETLLSIDPEKRGSASSGLMSRYINSKPYACEPSSLPKYPPNKEMDAKYREDSRRKR NGVKARELGVKRPKGTLRGSSFNKIGPKEEWKENTNTSFGPKANDNNKNASQAREAAAAIRRELNWNTSTAVLPTGLQMPKGDHQPYTDGPPAPAITASS GFAWTKKQKDDLLTTLSYDSNESQVSGLDAPFKFPNLNAGLEGKHSHHKDSISLQQQQQQNRVDAPSSDSLKTFLSYVIADDIPMSNSREFIEQSGKVEF SGPLLSQSNKVAQSNQIGALLQKNENQIRRAARTSRLDTGNGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39420		CDC2CAT	CDC2C (.1)		Lus10030692 [exp]	0	1
AT5G39420		CDC2CAT	CDC2C (.1)		Lus10005228 [exp]	1.0	0.9351
					Lus10010435 [exp]	1.4	0.9084
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10038381 [exp]	2.2	0.8965
AT3G60860			SEC7-like guanine nucleotide e...		Lus10009244 [exp]	3.9	0.9059
AT1G30360		ERD4	early-responsive to dehydratio...		Lus10024894 [exp]	4.9	0.9002
AT1G64760			O-Glycosyl hydrolases family 1...		Lus10002633 [exp]	5.1	0.8498
AT3G54030			Protein kinase protein with te...		Lus10017198 [exp]	5.8	0.8622
AT5G50150			Protein of Unknown Function (D...		Lus10042092 [exp]	7.1	0.8888
AT1G64760			O-Glycosyl hydrolases family 1...		Lus10020261 [exp]	7.1	0.8500
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10036242 [exp]	8.8	0.8920

Compare expression of checked genes

Lus10030692 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.