Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26690 218 / 2e-72 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G14010 213 / 2e-70 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G69460 206 / 5e-68 emp24/gp25L/p24 family/GOLD family protein (.1) AT2G03290 195 / 2e-63 emp24/gp25L/p24 family/GOLD family protein (.1) AT3G29070 192 / 3e-62 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G09580 149 / 2e-45 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G57620 136 / 2e-40 emp24/gp25L/p24 family/GOLD family protein (.1) AT2G03040 134 / 3e-40 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G21900 134 / 1e-39 emp24/gp25L/p24 family/GOLD family protein (.1) AT3G10780 114 / 1e-31 emp24/gp25L/p24 family/GOLD family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005227 [exp] 344 / 2e-122 AT1G26690 231 / 4e-77 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10036786 [exp] 210 / 7e-69 AT1G26690 275 / 3e-94 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10037143 [exp] 197 / 8e-65 AT1G26690 249 / 2e-85 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10030436 [exp] 196 / 2e-63 AT1G26690 263 / 2e-89 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10026625 [exp] 158 / 7e-49 AT1G26690 197 / 9e-64 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10022972 [exp] 142 / 2e-42 AT1G09580 297 / 3e-103 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10041939 [exp] 139 / 3e-41 AT1G21900 286 / 1e-98 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10001615 [exp] 138 / 4e-41 AT1G09580 294 / 4e-102 emp24/gp25L/p24 family/GOLD family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G086900 [exp] 231 / 1e-77 AT1G26690 282 / 2e-97 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.004G127200 [exp] 228 / 1e-76 AT1G26690 253 / 5e-86 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.008G090700 [exp] 225 / 2e-75 AT1G26690 308 / 1e-107 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.010G164600 [exp] 223 / 9e-75 AT1G69460 272 / 3e-93 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.002G085300 [exp] 150 / 9e-46 AT1G09580 280 / 2e-96 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.003G019300 [exp] 143 / 5e-43 AT1G09580 275 / 1e-94 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.001G210900 [exp] 142 / 7e-43 AT1G09580 268 / 7e-92 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.018G145544 [exp] 132 / 7e-40 AT1G26690 194 / 8e-64 emp24/gp25L/p24 family/GOLD family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0521 [flax] [poplar] GOLD-like PF01105 [flax] [poplar] EMP24_GP25L emp24/gp25L/p24 family/GOLD
Representative CDS sequence Show only first row Show all	>Lus10030693 pacid=23155346 polypeptide=Lus10030693 locus=Lus10030693.g ID=Lus10030693.BGIv1.0 annot-version=v1.0 ATGAGGTTCGAACTGCATTCGGGGGAGATGAAATGCATAGCCGAGGATATCAGGAGCCAGACGATCACTGTCGGAACTTACAGCATCGTCGATCCGTTGG AAGCTGATCCCGAAATCACTGTCAGGGTGGATTCGCCGTATGGGGCAAATTATCATGTGGGAAAGGATGTGAAGAAGGGTACTTTTGCATTCACGGCATT AGAAACGGGAGACCATTCCGCTTGCTTTTCGACTCCGAGCCACATTCCGGCCCTCAATATCACGGTTGATTTTGTTTGGCGATCGGGTGTTAATGCTCGA GAGTGGTCTAATATCGCCAAGAAAGGCAAGATTGATGCTATGGAAATTGAGCTGAAGAAGCTGTACGAGACAGTAAAAGGAATTCATGACGAAATTTACT ACCTTCGTGAAAGAGAGGAGGAAATGCAGGAACTGAACAGAAGAACAGACACAAATATGCTAGGCATGGGTTTGCTGTTTCTGGTGATCTGCCTGGCTGT TGCGGGACTCCATTTGTGGCATCTCAAGCATTACTTCGAGAGGAAGAAGCTTCTCTAG
AA sequence Show only first row Show all	>Lus10030693 pacid=23155346 polypeptide=Lus10030693 locus=Lus10030693.g ID=Lus10030693.BGIv1.0 annot-version=v1.0 MRFELHSGEMKCIAEDIRSQTITVGTYSIVDPLEADPEITVRVDSPYGANYHVGKDVKKGTFAFTALETGDHSACFSTPSHIPALNITVDFVWRSGVNAR EWSNIAKKGKIDAMEIELKKLYETVKGIHDEIYYLREREEEMQELNRRTDTNMLGMGLLFLVICLAVAGLHLWHLKHYFERKKLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Lus10030693 [exp]	0	1
AT1G21430		YUC11	Flavin-binding monooxygenase f...		Lus10000677 [exp]	3.5	1.0000
AT2G15220			Plant basic secretory protein ...		Lus10001608 [exp]	4.9	1.0000
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10005144 [exp]	6.0	1.0000
					Lus10024141 [exp]	6.9	1.0000
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027988 [exp]	7.7	1.0000
					Lus10013255 [exp]	8.5	1.0000
					Lus10013259 [exp]	9.2	1.0000
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10013964 [exp]	9.8	1.0000
AT3G06240			F-box family protein (.1)		Lus10014136 [exp]	10.4	1.0000
					Lus10028570 [exp]	11.0	1.0000

Compare expression of checked genes

Lus10030693 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.