Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01120 703 / 0 AtCGS1, ATCYS1, CGS1, MTO1 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G33320 575 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT3G57050 231 / 8e-70 CBL cystathionine beta-lyase (.1.2.3) AT1G64660 177 / 2e-49 ATMGL methionine gamma-lyase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005226 [exp] 955 / 0 AT3G01120 741 / 0.0 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10027313 [exp] 223 / 3e-66 AT3G57050 683 / 0.0 cystathionine beta-lyase (.1.2.3) Lus10039016 [exp] 219 / 1e-64 AT3G57050 688 / 0.0 cystathionine beta-lyase (.1.2.3) Lus10000880 [exp] 175 / 9e-49 AT1G64660 639 / 0.0 methionine gamma-lyase (.1) Lus10017333 [exp] 171 / 3e-47 AT1G64660 676 / 0.0 methionine gamma-lyase (.1) Lus10001672 [exp] 156 / 2e-42 AT1G64660 546 / 0.0 methionine gamma-lyase (.1) Lus10000881 [exp] 156 / 5e-42 AT1G64660 588 / 0.0 methionine gamma-lyase (.1) Lus10033233 [exp] 130 / 2e-33 AT1G64660 377 / 8e-130 methionine gamma-lyase (.1) Lus10001671 [exp] 75 / 1e-15 AT1G64660 242 / 2e-79 methionine gamma-lyase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G086500 [exp] 798 / 0 AT3G01120 720 / 0.0 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.016G038200 [exp] 219 / 7e-65 AT3G57050 714 / 0.0 cystathionine beta-lyase (.1.2.3) Potri.001G084000 [exp] 168 / 4e-46 AT1G64660 689 / 0.0 methionine gamma-lyase (.1) Potri.003G187032 [exp] 91 / 1e-20 AT1G64660 288 / 2e-96 methionine gamma-lyase (.1) Potri.003G146600 [exp] 49 / 3e-06 AT1G64660 239 / 1e-76 methionine gamma-lyase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF01053 [flax] [poplar] Cys_Met_Meta_PP Cys/Met metabolism PLP-dependent enzyme
Representative CDS sequence Show only first row Show all	>Lus10030694 pacid=23155394 polypeptide=Lus10030694 locus=Lus10030694.g ID=Lus10030694.BGIv1.0 annot-version=v1.0 ATGGCTGTCTCTTCCACCCTCTGCCCTAAGCTCGTCACCGCATGTCCTTCTCCCTTCGAGTGCCGTTCCGATCCTCACGGCGCCAACCACGATCAACCTG GACCGGGGAGGTTTTCCTCCTCCAGAGTCAACTCGCTCCGTCCTCTCGGATCTCTCCTCGGCGGAGGCGCCGCCGGGGGATGCTACGGGGTGTCGTCTCT CATCCTTAAGTTCCCTCCGAATTTCGTCCGCCAGCTGAGCAACAAGGCTCGCCGGAACTGCAGCAACATCGGCGTCGCGCAGATCGTCGCGGCGAAGTGG TCTGACAACTCGGCCTCCCGTTTCCCTTCGGCGGGCTCGGGTGGCCACCGACCTNNNNNNNNTCCCGCAGCGCCCCCCGCCGCCTCCGCCCCTCCAGCAG TCGTCCAGGATCCGGTTGTCGCCGGTGAGAATGGAGCGGTTGCTGAGGGGCAAGAGAGGGAAGGAGATGTACAGGATTTGACCGACGAGTTGACATATGG TTCATTTTTGAGCTCCGATGGGAGCATCGCGATTCACGCTGGTGAAAGATTAGGCCGTGGCATTGTTACTGATGCAATCACTACTCCCGTAGTCAATACT GCTGCCTACTTTTTCAAGAAAACTCAACAGCTGATTGATTTCAAGGAGAAACGCCATGAAAGCTTTGAATATGGTCGCTACGGAAATCCGACCACAGTTG TTCTGGAGGAGAAGATTAGCGCGCTTGAAGGAGCCGAATCAACAGTGATTTTGGCATCTGGGATGTGTGCTAGTACTGCCATGTTAATGGCTCTGGTTCC AGCTGGTGGCCACATCGTCACTACCACTGATTGTTATAGGAGGACAAGGATCTTCATTGAGAAATTTCTGCCTAAGTTGGGAGTAACGGCCACAGTTATC GATCCTGCAGATATCGACTCCTTGAAGAATGCCCTTAATGAGAAAAATGTTTCTCTTTTCTTCACGGAATCTCCCACTAATCCCTTCTTGCGGTGTGTTG ACATTGAGCTGGTTTCAAAACTGTGCCATGAGAAAGGAGCATTGGTCTGCATAGATGGTACTTTTGCAACACCTCTCAATCAGAAGGCTCTTGCTCTTGG TGCAGATCTTATTTTGCATTCTGCGACAAAGTTCCTTGGGGGCCATAATGATGTACTTGCTGGCTCCATTAGTGGATCTCTGAAATTAGTTACAGAAATT CGCATGCTGCACCACATTCTGGGAGGAGTTCTTAACCCTAATGCTGCTTACTTGCTTATTCGAGGTATGAAGACACTGCATCTTCGTGTACAGCAACAAA ACTCTACTGCATTGAGGATGGCTCAACTTTTAGAGGCACATCCCAAGGTAAGTCGTGTTTACTATCCTGGACTAACTAGTCACCCGGAGCATCACATTGC GAAGAAGCAAATGACTGGCTTTGGTGGAGTTGTCAGTTTTGAGATTGATGGAGACCTGTACACGACCGCAAAGTTTGTGGATGCACTGAGAATCCCTTAC ATCGCCGCATCTTTCGGCGGCTGTGAGAGCATCATCGATCAGCCTGCTATCATGTCTTACTGGGATCTTTCGCCGGCAGAGAGGGAGAAGTATGGGATAA GAGACAACTTGGTGAGGTTCAGCATTGGAGTTGAGGACTTCAACGATATAAAGGCTGATGTGCTTCAAGCGCTGGAAACCATATGA
AA sequence Show only first row Show all	>Lus10030694 pacid=23155394 polypeptide=Lus10030694 locus=Lus10030694.g ID=Lus10030694.BGIv1.0 annot-version=v1.0 MAVSSTLCPKLVTACPSPFECRSDPHGANHDQPGPGRFSSSRVNSLRPLGSLLGGGAAGGCYGVSSLILKFPPNFVRQLSNKARRNCSNIGVAQIVAAKW SDNSASRFPSAGSGGHRPXXXPAAPPAASAPPAVVQDPVVAGENGAVAEGQEREGDVQDLTDELTYGSFLSSDGSIAIHAGERLGRGIVTDAITTPVVNT AAYFFKKTQQLIDFKEKRHESFEYGRYGNPTTVVLEEKISALEGAESTVILASGMCASTAMLMALVPAGGHIVTTTDCYRRTRIFIEKFLPKLGVTATVI DPADIDSLKNALNEKNVSLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLILHSATKFLGGHNDVLAGSISGSLKLVTEI RMLHHILGGVLNPNAAYLLIRGMKTLHLRVQQQNSTALRMAQLLEAHPKVSRVYYPGLTSHPEHHIAKKQMTGFGGVVSFEIDGDLYTTAKFVDALRIPY IAASFGGCESIIDQPAIMSYWDLSPAEREKYGIRDNLVRFSIGVEDFNDIKADVLQALETI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01120		AtCGS1, ATCYS1,...	METHIONINE OVERACCUMULATION 1,...		Lus10030694 [exp]	0	1
AT5G47390	MYB		myb-like transcription factor ...		Lus10004248 [exp]	9.7	0.8457
AT1G21780			BTB/POZ domain-containing prot...		Lus10029677 [exp]	11.2	0.8345
AT3G54680			proteophosphoglycan-related (....		Lus10017694 [exp]	18.7	0.7940
AT1G35720		ATOXY5, ANNAT1	annexin 1 (.1)		Lus10003611 [exp]	20.9	0.8033
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Lus10010926 [exp]	25.9	0.8210
AT2G38320		TBL34	TRICHOME BIREFRINGENCE-LIKE 34...		Lus10022676 [exp]	28.3	0.7882
AT5G14890			NHL domain-containing protein ...		Lus10033413 [exp]	28.9	0.7957
AT1G07630		PLL5	pol-like 5 (.1)		Lus10024397 [exp]	29.5	0.8240
AT2G17990			unknown protein		Lus10041920 [exp]	31.1	0.8304
AT5G01830			ARM repeat superfamily protein...		Lus10025244 [exp]	31.5	0.8002

Compare expression of checked genes

Lus10030694 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.