Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29240 85 / 2e-20 Protein of unknown function (DUF179) (.1), Protein of unknown function (DUF179) (.2) AT1G33780 50 / 6e-08 Protein of unknown function (DUF179) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005224 [exp] 164 / 2e-51 AT3G29240 291 / 2e-98 Protein of unknown function (DUF179) (.1), Protein of unknown function (DUF179) (.2) Lus10001286 [exp] 61 / 7e-12 AT1G33780 386 / 9e-135 Protein of unknown function (DUF179) (.1) Lus10009463 [exp] 61 / 1e-11 AT1G33780 379 / 6e-132 Protein of unknown function (DUF179) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G125800 [exp] 104 / 6e-28 AT3G29240 358 / 3e-124 Protein of unknown function (DUF179) (.1), Protein of unknown function (DUF179) (.2) Potri.019G073000 [exp] 61 / 1e-11 AT1G33780 349 / 4e-120 Protein of unknown function (DUF179) (.1) Potri.013G100000 [exp] 59 / 6e-11 AT1G33780 385 / 3e-134 Protein of unknown function (DUF179) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030695 pacid=23155212 polypeptide=Lus10030695 locus=Lus10030695.g ID=Lus10030695.BGIv1.0 annot-version=v1.0 ATGGAAGCTAACTGCTTTCTCACTTCACCCAATCCCTTCCCCAAATCATCTGCAAAACCACCGCCCGCCGGAGCTCCCAAGAGAATCCGCCTTGCCCCAT CAATTACATGTTGTCAAATTTCGGAATCATCCGGTGAGCACAACCGATCCTTCCTGGACGCCGACTGGAGATGGTTCAGAGCAAGACTCTTAGCCAACGA GCAATCCTTGATCACCGGAGGATCCACGGCGGCGGATCATCATCCCAAAGCTAAACCACCACCGTTGGTGACAGTAGGGGACAGATGGGCCCACGCGATC CACGATCCGGAAAAGGGCTGCCTACTCATAGCTACGGAGAAGCTGGACGGGGTCCACATCTTCGAACGACAGTCATCCTCATCCTGTCAACGGGCCCATT AG
AA sequence Show only first row Show all	>Lus10030695 pacid=23155212 polypeptide=Lus10030695 locus=Lus10030695.g ID=Lus10030695.BGIv1.0 annot-version=v1.0 MEANCFLTSPNPFPKSSAKPPPAGAPKRIRLAPSITCCQISESSGEHNRSFLDADWRWFRARLLANEQSLITGGSTAADHHPKAKPPPLVTVGDRWAHAI HDPEKGCLLIATEKLDGVHIFERQSSSSCQRAH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29240			Protein of unknown function (D...		Lus10030695 [exp]	0	1
AT1G13890		ATSNAP30, SNAP3...	soluble N-ethylmaleimide-sensi...		Lus10004660 [exp]	1.7	0.7414
					Lus10029488 [exp]	6.7	0.6720
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Lus10009231 [exp]	18.9	0.6574
AT5G52780			Protein of unknown function (D...		Lus10038849 [exp]	20.1	0.7115
AT4G28940			Phosphorylase superfamily prot...		Lus10023668 [exp]	29.3	0.6983
AT3G12660		FLA14	FASCICLIN-like arabinogalactan...		Lus10041630 [exp]	30.0	0.6480
AT4G02610			Aldolase-type TIM barrel famil...		Lus10014725 [exp]	31.2	0.5907
AT1G03700			Uncharacterised protein family...		Lus10032548 [exp]	31.7	0.6560
AT1G13890		ATSNAP30, SNAP3...	soluble N-ethylmaleimide-sensi...		Lus10037092 [exp]	35.5	0.6291
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10016025 [exp]	38.7	0.6616

Compare expression of checked genes

Lus10030695 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.