Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29240 140 / 6e-42 Protein of unknown function (DUF179) (.1), Protein of unknown function (DUF179) (.2) AT1G33780 83 / 5e-20 Protein of unknown function (DUF179) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005224 [exp] 209 / 3e-69 AT3G29240 291 / 2e-98 Protein of unknown function (DUF179) (.1), Protein of unknown function (DUF179) (.2) Lus10009463 [exp] 77 / 7e-18 AT1G33780 379 / 6e-132 Protein of unknown function (DUF179) (.1) Lus10001286 [exp] 77 / 1e-17 AT1G33780 386 / 9e-135 Protein of unknown function (DUF179) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G125800 [exp] 164 / 2e-51 AT3G29240 358 / 3e-124 Protein of unknown function (DUF179) (.1), Protein of unknown function (DUF179) (.2) Potri.019G073000 [exp] 79 / 2e-18 AT1G33780 349 / 4e-120 Protein of unknown function (DUF179) (.1) Potri.013G100000 [exp] 72 / 5e-16 AT1G33780 385 / 3e-134 Protein of unknown function (DUF179) (.1) Potri.007G070400 [exp] 40 / 0.0002 AT3G19780 770 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02622 [flax] [poplar] DUF179 Uncharacterized ACR, COG1678
Representative CDS sequence Show only first row Show all	>Lus10030696 pacid=23155275 polypeptide=Lus10030696 locus=Lus10030696.g ID=Lus10030696.BGIv1.0 annot-version=v1.0 ATGTCCATTAAGGAGACGGCGCAGTATTTGCCGACGGCGTTTACCGGTAGGCCGTTGTTCTTCGGGGGGCCATTGGAAGAAGGGCTGTTTCTGGTGAGGC CCAAAGGAGGGCACGACAATGACGGCGTGGGGAGGAGCGGTGTTTTCGAGGAGGTGATGAGAGGTCTGTACTACGGCACGAAAGAGTCGGCGGGGTGTGC GGCGGAGATGGTGAACAGGAACGCCGTCGGAGTTGGGGATTTCAAGTTCTTCGATGGGTATTGTGGCTGGGGGGGTGGGGAGCTGAGGGAGGAGATTGAT GGTGGTTATTGGACTTTGGCGGCTTGGAGCAGCTGA
AA sequence Show only first row Show all	>Lus10030696 pacid=23155275 polypeptide=Lus10030696 locus=Lus10030696.g ID=Lus10030696.BGIv1.0 annot-version=v1.0 MSIKETAQYLPTAFTGRPLFFGGPLEEGLFLVRPKGGHDNDGVGRSGVFEEVMRGLYYGTKESAGCAAEMVNRNAVGVGDFKFFDGYCGWGGGELREEID GGYWTLAAWSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29240			Protein of unknown function (D...		Lus10030696 [exp]	0	1
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10002019 [exp]	13.5	0.8327
AT5G39590			TLD-domain containing nucleola...		Lus10024317 [exp]	18.9	0.7706
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036818 [exp]	20.4	0.8218
AT2G42280	bHLH	bHLH130	basic helix-loop-helix (bHLH) ...		Lus10037484 [exp]	22.5	0.8084
AT5G39710		EMB2745	EMBRYO DEFECTIVE 2745, Tetratr...		Lus10022739 [exp]	22.8	0.7908
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Lus10010758 [exp]	23.4	0.8126
AT3G52520			unknown protein		Lus10004216 [exp]	23.9	0.8079
AT4G28320		MAN5, AtMAN5	endo-beta-mannase 5, Glycosyl ...		Lus10039719 [exp]	31.0	0.8012
AT4G16990		RLM3	RESISTANCE TO LEPTOSPHAERIA MA...		Lus10000574 [exp]	36.5	0.7058
AT4G26110		NAP1;1, ATNAP1;...	ARABIDOPSIS THALIANA NUCLEOSOM...		Lus10042106 [exp]	37.8	0.8001

Compare expression of checked genes

Lus10030696 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.