Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15400 1331 / 0 U-box domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005222 [exp] 1652 / 0 AT5G15400 1340 / 0.0 U-box domain-containing protein (.1) Lus10016166 [exp] 44 / 0.0006 AT3G52450 462 / 2e-161 plant U-box 22 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G089600 [exp] 1389 / 0 AT5G15400 1557 / 0.0 U-box domain-containing protein (.1) Potri.004G121200 [exp] 1383 / 0 AT5G15400 1509 / 0.0 U-box domain-containing protein (.1) Potri.010G113900 [exp] 44 / 0.0005 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1) Potri.002G248600 [exp] 44 / 0.0006 AT3G07360 573 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain CL0229 [flax] [poplar] PF10408 [flax] [poplar] Ufd2P_core Ubiquitin elongating factor core
Representative CDS sequence Show only first row Show all	>Lus10030697 pacid=23155322 polypeptide=Lus10030697 locus=Lus10030697.g ID=Lus10030697.BGIv1.0 annot-version=v1.0 ATGAAGGACAAGAATGTGAAATCCCAGCTGGAGACCACGATCAAGCAGGCTGAGAAGCTGTTCGTTTCATATGTTAGAATCCATTTGGGAAACCCCGAGC TGTTCCCTTCCAATTCGCCGTCTGGAAACAAAGCCACTGTTTCCAGTCTCCTGCCGTTGATTTTTGGGGCGGTTGGCCGGGACGGGTTTAACGGAGGTGG AGGAAGTCAGCCTCCTCCTCCAGGGTTTCTGGATGAATTGTTCAGCGAGGCGGATTTCGATGCCTTGTATCCTATATTTAAATCGCTTTACGATGAATTG CGAGTTAATGTGATTAAGGTATCGGCTTTAGGGAACTTTCAACAGCCTTTAGCTGCACTGTTGTATTTAGTTAAGTTGCCCGCCGGTGCGAAGTCGCTAG TGAATGATCCTTGGTGGATTCCTAAAGGAGCTTACTTGCATGGACGAGTCATTGAAGTGGCTAGTGTACTAGGGCCATTCCTACACGTCAGTGCATTGCC TGATCATTATACAACGTTCAAGAGCGAGCCTGATGTTGGACAACAGTGCTTCTCAGCAGCATCTACTAGTAGACCTGCTGACTTAGTATCTTCGTTTACT ACGATAAAAACAGTAATGAATAGCTTATACGAGGGGCTATCCGATGTGATGTTAACACTCCTTAAAAATGCTGAGATTCGCGAGCATGTCCTTCAGTATC TTGCTGAGGTGATCAACAGAAACGCATCTAGATCACATATTCAGGTTGATCCCGCAACTTGTGCGAGCTCGGGAATGTTTGTCAATCTGAGCGCGGTTAT GCTTCGACTCTGTGAACCCTTTTTAGACTCAAATTGCTCCAAGGTTGACAAAATTGATCCAGCATATGTATTCTACAGTGATCGTTTGGATCTAAGAGGG TTGACAGCTTTACATGCTTCTTCAGAAGAAGTTGCTGAGTGGATTAAAAGTAGTAATCCCTTGAAATCTAATATAGATTCTGGATCTGGTGATATTGAAA ACCGATTGGTCCAATCTCAAGGAGCCAGTAGTTCTGGTTGTGGAACTGCTGGTGCCAAGTCTGCATTATCTGGTGGTGGGAAGGCGTCATACACATTTGT ATGTGAATGCTTCTTTATGACTGCAAGGGTTCTCAACTTGGGCATGCTGAAAGCATTTTCCGATTTCAAGCACTTGGTTCAGGACATTTCAAGATCCGAG AGCTCTCTGTCAAGACTAAAAACCATGCACGAACAGACACCTTCTCCACAAATACAGCTGGAAATTAATCGCCTTGAGAAGGAATTAGAATTATATTCCC AGGAAAAACTTTGTTATGAGGCCCAGCTACTGAGGGATCCAACTCTCATTCAACAAGGGTTATCTTTCTATCGACTAATGGTGGTTTGGTTAGTTAACCT GGCCGGTGGCTTTAAAATGCCTCTTTCATCAACGTGCCCCATGGAATTTGCATCGATGCCTGAGCATTTTATGGAAGATGTATTGGAATTACTTATATTT GCTTCTCGGATCCCAAAAGCTTTAGATGGGGTCGTTCTGGACGATTTTATGAACTTCATTATCATGTTTATGGGGAGTCCAACACACATCAGGAACCCTT ATCTCAGAGCAAAGATGGTGGAGGTGTTGAACTGCTGGATGCCACGAGGGAGGTGTTGCTACTGCAGTGGTTCATCTGCAACAAGTACTCTCTTTGAAGG ACACCAATTATCCCTCGAGTATCTTGTTAGGAATCTATTGAAGCTTTATGTTGACATTGAGTTCACCGGTTCTCACACTCAGTTTTATGACAAGTTCAAC ATCAGGCATAATATTGCCGAGCTGCTCGAGTACCTATGGCAGGTGCCTAGTCATCGTAATGCATGGAGACAGATTGCCAAGGAAGAGGAGAAGGGTGTAT ACTTGAATTTCTTAAACTTTTTAATCAACGATGGCATATATCTTCTGGATGAAAGTTTGAACAAGATTCTGGAGCTGAAAGAAATGGAAGCAGAAATGTC AAACACCGTGGAATGGGAACAGAGACCAGCTCAGGAGAGGCAGGAAAGAGCCCGGGTGTTCCAGTCCCAGGAAAATATCATCCGGATTGATATGAAGTTG GCAAATGAAGATGTCAGTCTGCTGGCCTTCACATCAGAGCAGATAACAGTTCCTTTCCTACTTCCTGAGATGGTGGAAAGAGTGGCCAGCATGTTGAATT ACTTTCTCTTACAACTCGTTGGTCCCCAGAGGAAATCTCTTACTCTTAAAGACCCGGAGAAGTATGAATTTCGTCCAAGACAGCTCCTTAAGCAGATTGT AAACATATACGTCAACCTAGCAAGGGGTGATAAAGAGAACATATTCCCAACTGCCATCTCAAAGGATGGAAGGTCGTACAACGAACAGCTATTTAGTGCC GCTGCTGATGTCCTTCGAAGAATTAATGAAGATGGGAGGATCATACAGGAGTTTGTCGAGCTCGGTGCAAAAGCAAAAGTTGCTGCCACCGAAGAAATGG ATGCTGAAGCTACCCTCGGGGAGATACCAGACGAATTCCTTGACCCGATCCAGTACACACTGATGAAAGACCCAGTAATACTACCTTCGTCAAGAATCAC GGTGGACCGGCCTGTCATTCAAAGGCATCTCCTTAGCGACAGCACGGACCCTTTCAACCGATCGCACCTAACGGCAGATATGCTGATATCAGACGTGGAG CTGAAGGCAAAGATAGAGGAGTTCATAAGATCTCAACAGCTCAAGAGGCATAGTAGTGACGACTTGAGCATGCAGAGCAGCAAAGCAGCAATGCAAACCA CGGCAGGGGACATGCTGATTGATTGA
AA sequence Show only first row Show all	>Lus10030697 pacid=23155322 polypeptide=Lus10030697 locus=Lus10030697.g ID=Lus10030697.BGIv1.0 annot-version=v1.0 MKDKNVKSQLETTIKQAEKLFVSYVRIHLGNPELFPSNSPSGNKATVSSLLPLIFGAVGRDGFNGGGGSQPPPPGFLDELFSEADFDALYPIFKSLYDEL RVNVIKVSALGNFQQPLAALLYLVKLPAGAKSLVNDPWWIPKGAYLHGRVIEVASVLGPFLHVSALPDHYTTFKSEPDVGQQCFSAASTSRPADLVSSFT TIKTVMNSLYEGLSDVMLTLLKNAEIREHVLQYLAEVINRNASRSHIQVDPATCASSGMFVNLSAVMLRLCEPFLDSNCSKVDKIDPAYVFYSDRLDLRG LTALHASSEEVAEWIKSSNPLKSNIDSGSGDIENRLVQSQGASSSGCGTAGAKSALSGGGKASYTFVCECFFMTARVLNLGMLKAFSDFKHLVQDISRSE SSLSRLKTMHEQTPSPQIQLEINRLEKELELYSQEKLCYEAQLLRDPTLIQQGLSFYRLMVVWLVNLAGGFKMPLSSTCPMEFASMPEHFMEDVLELLIF ASRIPKALDGVVLDDFMNFIIMFMGSPTHIRNPYLRAKMVEVLNCWMPRGRCCYCSGSSATSTLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFN IRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDGIYLLDESLNKILELKEMEAEMSNTVEWEQRPAQERQERARVFQSQENIIRIDMKL ANEDVSLLAFTSEQITVPFLLPEMVERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPRQLLKQIVNIYVNLARGDKENIFPTAISKDGRSYNEQLFSA AADVLRRINEDGRIIQEFVELGAKAKVAATEEMDAEATLGEIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSTDPFNRSHLTADMLISDVE LKAKIEEFIRSQQLKRHSSDDLSMQSSKAAMQTTAGDMLID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15400			U-box domain-containing protei...		Lus10030697 [exp]	0	1
AT5G49530			SIN-like family protein (.1)		Lus10037936 [exp]	2.6	0.9100
AT5G45190			Cyclin family protein (.1.2)		Lus10041213 [exp]	3.5	0.9001
AT1G58230			binding (.1)		Lus10042866 [exp]	5.1	0.9098
AT5G05570			transducin family protein / WD...		Lus10037841 [exp]	5.5	0.8999
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Lus10009711 [exp]	6.3	0.8939
AT5G15680			ARM repeat superfamily protein...		Lus10035141 [exp]	6.3	0.8832
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Lus10001717 [exp]	6.5	0.9062
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Lus10011134 [exp]	6.9	0.8985
AT3G49490			unknown protein		Lus10015581 [exp]	8.7	0.8755
AT1G05570		ATGSL6, ATGSL06...	GLUCAN SYNTHASE-LIKE 6, callos...		Lus10003920 [exp]	10.5	0.8617

Compare expression of checked genes

Lus10030697 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.