Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15410 762 / 0 ATCNGC2, DND1 DEFENSE NO DEATH 1, CYCLIC NUCLEOTIDE GATED CHANNEL 2, CYCLIC NUCLEOTIDE-GATED CHANNEL 2, Cyclic nucleotide-regulated ion channel family protein (.1.2) AT5G54250 497 / 2e-168 HLM1, DND2, ATCNGC4 DEFENSE, NO DEATH 2, cyclic nucleotide-gated cation channel 4 (.1.2.3) AT5G57940 298 / 1e-91 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3) AT2G23980 298 / 7e-91 ATCNGC6 CYCLIC NUCLEOTIDE GATED CHANNEL 6, cyclic nucleotide-gated channel 6 (.1) AT4G30560 295 / 2e-90 ATCNGC9 cyclic nucleotide gated channel 9 (.1.2) AT2G24610 294 / 7e-90 ATCNGC14 cyclic nucleotide-gated channel 14 (.1) AT5G53130 294 / 1e-89 ATCNGC1, CNGC1 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) AT1G19780 290 / 8e-88 ATCNGC8 cyclic nucleotide gated channel 8 (.1) AT4G01010 286 / 6e-87 ATCNGC13 cyclic nucleotide-gated channel 13 (.1) AT1G01340 285 / 2e-86 ACBK1, ATCNGC10 cyclic nucleotide gated channel 10 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005221 [exp] 816 / 0 AT5G15410 680 / 0.0 DEFENSE NO DEATH 1, CYCLIC NUCLEOTIDE GATED CHANNEL 2, CYCLIC NUCLEOTIDE-GATED CHANNEL 2, Cyclic nucleotide-regulated ion channel family protein (.1.2) Lus10004509 [exp] 499 / 4e-169 AT5G54250 948 / 0.0 DEFENSE, NO DEATH 2, cyclic nucleotide-gated cation channel 4 (.1.2.3) Lus10024073 [exp] 298 / 3e-91 AT1G19780 1033 / 0.0 cyclic nucleotide gated channel 8 (.1) Lus10041662 [exp] 298 / 6e-91 AT1G19780 1056 / 0.0 cyclic nucleotide gated channel 8 (.1) Lus10022155 [exp] 293 / 4e-89 AT4G30560 1095 / 0.0 cyclic nucleotide gated channel 9 (.1.2) Lus10036260 [exp] 294 / 2e-88 AT4G30560 1102 / 0.0 cyclic nucleotide gated channel 9 (.1.2) Lus10021461 [exp] 289 / 5e-88 AT2G28260 1029 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10037394 [exp] 286 / 5e-87 AT2G28260 983 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10019014 [exp] 290 / 8e-85 AT5G53130 1122 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G089800 [exp] 855 / 0 AT5G15410 1005 / 0.0 DEFENSE NO DEATH 1, CYCLIC NUCLEOTIDE GATED CHANNEL 2, CYCLIC NUCLEOTIDE-GATED CHANNEL 2, Cyclic nucleotide-regulated ion channel family protein (.1.2) Potri.017G089900 [exp] 728 / 0 AT5G15410 911 / 0.0 DEFENSE NO DEATH 1, CYCLIC NUCLEOTIDE GATED CHANNEL 2, CYCLIC NUCLEOTIDE-GATED CHANNEL 2, Cyclic nucleotide-regulated ion channel family protein (.1.2) Potri.001G407800 [exp] 518 / 2e-176 AT5G54250 972 / 0.0 DEFENSE, NO DEATH 2, cyclic nucleotide-gated cation channel 4 (.1.2.3) Potri.018G106100 [exp] 297 / 7e-91 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.001G043900 [exp] 296 / 2e-90 AT1G19780 967 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.003G183000 [exp] 296 / 3e-90 AT1G19780 893 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.018G097600 [exp] 291 / 3e-89 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1) Potri.018G009200 [exp] 280 / 1e-85 AT2G24610 939 / 0.0 cyclic nucleotide-gated channel 14 (.1) Potri.017G067000 [exp] 282 / 2e-85 AT3G48010 964 / 0.0 cyclic nucleotide-gated channel 16 (.1) Potri.012G002200 [exp] 281 / 4e-85 AT5G53130 1087 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00027 [flax] [poplar] cNMP_binding Cyclic nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10030698 pacid=23155391 polypeptide=Lus10030698 locus=Lus10030698.g ID=Lus10030698.BGIv1.0 annot-version=v1.0 ATGCTACGCCTGCACGCAGGTGGGAGTCCCTGTCTTCCACTCCACAACCTGCGACGCCGCCGGCCACCAGCCCATCTGGGAAGCCTCCGCCGGCTCCTCC CTCGTCCCAATCCACCCGACATCCTCCGCCCGCCAGCCACCGCCGGCGCCACTCCGCGGCGGCAGCAGCAACAACAACCTCGCAGACCAGCGAGCGGCGC GTTCGGAACAGTGCTCGACCCGCGGAGCAAGCGCGTGCAGAGGCTGAACAGGGCTTTCCTGCTGGCGCGTGCGATGGCTCTGGCCATCGACCCGCTCTTC TTCTACGCGCTGTCGATAAGGGAGTCCATGGTTGTCGGGTGCGGGAAGCTGGTGTGGGACCCGCGTGCCATAGCTCATCACTACCTCAGGTCTCTCAAGG GGTTCTGGTTCGACGCCTTCGTTATCCTCCCCGTCCCACAGGCAGTATTCTGGTTGGTGGTGCCAAGACTGATAAGAGAGGAACAGATCAAGCTGATAAT GACAATACTGTTACTAATATTCTTGTTCCAGTTCCTCCCAAAAGTATACCACAGCCTCAGCTTAATGCGGAGAATGCAGAAGGTCACAGGCTACATCTTT GGCACTATTTGGTGGGGTTTCGCCCTTAACCTCATCGCTTACTTCATCGCCTCTCACGTTGCTGGAGGATGCTGGTACGTCCTTGCCATCCAACGAGCTG CTTCGTGCATCAAGCAGCAGTGTGACATGATGAATTCACACTGTGACTTGTCCCTGTCGTGCTCCGAAGAAGTATGTTACCGACTTGTATTACAAGCTAC CACGGCTGGTGGTACTAACCCTTGCGGTGGAAACTCAACTTCTGCTGCACCTCTCAGAACCCCAATGTGCTTGGACATGGATGGAAACTTCAACTATGGG ATTTATAAGTGGGCTCTTCCTGTCATTTCTAGCAATTCCTTGGCTGTCAAGATTCTTTACCCCATTTTCTGGGGCCTCATGACCCTCAGTACGTTTGGGA ATGATCTTGAACCAACAAGTAACTGGCTGGAAGTGATGTTCAGCATATGCCTGGTGCTTAGTGGACTGATGCTCTTCACGTTGTTGATTGGTAACATTCA GATGTTCTTGCACGCGGTGATGGCGAAGAAGAGAAAGATGCAGTTGAGATGCAGAGACATGGAATGGTGGATGAGGAGAAGACAGCTCCCATCCCGTCTC AGACAGAGAGTTCGACATTATGAACGCCAGAACTGGGCAGCCATGGGTGGCGAGGACGAGATGGAACTCATCAAAGACTTGCCGGAAGGTCTACGACGAG ATATCAAGCGTTTCCTCTGCCTAGAGCTCATTAAGAAGGTGCCACTTTTCCACAACTTGGATGACTTGATTCTTGACAACATATGTGACAGAGTTAGGCC TGTTGTATTCTCCAAAGACGAAAAGATAATAAGAGAAGGGGACCCGGTTAAGAAAATGGTGTTCTTAGTCCGTGGAAGGATAAAGAGTTCCCAAAGCCTT AGCAAAGGTGTGGTGGCGACGAATGTGATCGAAGACGGAGGCTTCTTGGGAGATGAACTGCTGTCGTGGTGCCTCCGCCGCCCATTCAACGAGAGGCTAC CGGCTTCGTCGGCTACATTCGTGTGTATCGAGCCCACCGAGGCGTTCGGGCTGGATGCGAACCATCTCAAGTACATAACGGACCATTTCCGGTACAAGTT TGCGAACGAGAGGCTCAAGAGGACCGCGAGGTATTACTCGTCGAACTGGCGTACTTGGGCGGCTGTGAACCTCCAGTTCGCCTGGAGACGGTACCTGAAG AGGCGGGCTAGAGGTGGTGATGGTGGTGGTGCTCATGGTCCGGTGAATGTTGCGGTGGAAAATGGAGGAGATGCTGAACACCGGTTGCTTAGGTATGCTG CAATGTTCATGTCTCTTAGACCACACGACCACCTTGAATGA
AA sequence Show only first row Show all	>Lus10030698 pacid=23155391 polypeptide=Lus10030698 locus=Lus10030698.g ID=Lus10030698.BGIv1.0 annot-version=v1.0 MLRLHAGGSPCLPLHNLRRRRPPAHLGSLRRLLPRPNPPDILRPPATAGATPRRQQQQQPRRPASGAFGTVLDPRSKRVQRLNRAFLLARAMALAIDPLF FYALSIRESMVVGCGKLVWDPRAIAHHYLRSLKGFWFDAFVILPVPQAVFWLVVPRLIREEQIKLIMTILLLIFLFQFLPKVYHSLSLMRRMQKVTGYIF GTIWWGFALNLIAYFIASHVAGGCWYVLAIQRAASCIKQQCDMMNSHCDLSLSCSEEVCYRLVLQATTAGGTNPCGGNSTSAAPLRTPMCLDMDGNFNYG IYKWALPVISSNSLAVKILYPIFWGLMTLSTFGNDLEPTSNWLEVMFSICLVLSGLMLFTLLIGNIQMFLHAVMAKKRKMQLRCRDMEWWMRRRQLPSRL RQRVRHYERQNWAAMGGEDEMELIKDLPEGLRRDIKRFLCLELIKKVPLFHNLDDLILDNICDRVRPVVFSKDEKIIREGDPVKKMVFLVRGRIKSSQSL SKGVVATNVIEDGGFLGDELLSWCLRRPFNERLPASSATFVCIEPTEAFGLDANHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNLQFAWRRYLK RRARGGDGGGAHGPVNVAVENGGDAEHRLLRYAAMFMSLRPHDHLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15410		ATCNGC2, DND1	DEFENSE NO DEATH 1, CYCLIC NUC...		Lus10030698 [exp]	0	1
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10028475 [exp]	12.5	0.7904
AT1G36320			unknown protein		Lus10033109 [exp]	12.8	0.7858
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10029100 [exp]	13.9	0.7961
AT4G04850		ATKEA3, KEA3	K+ efflux antiporter 3, K+ eff...		Lus10007104 [exp]	19.9	0.7743
AT1G78230			Outer arm dynein light chain 1...		Lus10020932 [exp]	21.0	0.7177
AT5G20380		PHT4;5	phosphate transporter 4;5 (.1)		Lus10008039 [exp]	24.5	0.7544
AT1G08490		ATSUFS, SUFS, A...	chloroplastic NIFS-like cystei...		Lus10031670 [exp]	31.6	0.6631
AT5G51160			Ankyrin repeat family protein ...		Lus10029008 [exp]	32.4	0.7646
AT4G28080			Tetratricopeptide repeat (TPR)...		Lus10035822 [exp]	36.4	0.7730
AT5G20380		PHT4;5	phosphate transporter 4;5 (.1)		Lus10008040 [exp]	39.7	0.7697

Compare expression of checked genes

Lus10030698 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.