Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29270 258 / 2e-86 RING/U-box superfamily protein (.1.2) AT1G69330 239 / 1e-78 RING/U-box superfamily protein (.1) AT1G74370 217 / 2e-70 RING/U-box superfamily protein (.1) AT1G21651 51 / 3e-07 zinc ion binding (.1) AT1G21650 51 / 4e-07 SECA2 Preprotein translocase SecA family protein (.1.2.3) AT5G13530 44 / 8e-05 KEG KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005220 [exp] 421 / 2e-150 AT3G29270 317 / 3e-109 RING/U-box superfamily protein (.1.2) Lus10003473 [exp] 271 / 2e-91 AT3G29270 296 / 2e-101 RING/U-box superfamily protein (.1.2) Lus10015732 [exp] 268 / 4e-90 AT3G29270 296 / 2e-101 RING/U-box superfamily protein (.1.2) Lus10004666 [exp] 214 / 9e-69 AT1G69330 272 / 1e-91 RING/U-box superfamily protein (.1) Lus10026648 [exp] 219 / 5e-68 AT1G69330 275 / 2e-89 RING/U-box superfamily protein (.1) Lus10028560 [exp] 52 / 2e-07 AT1G21650 687 / 0.0 Preprotein translocase SecA family protein (.1.2.3) Lus10024135 [exp] 41 / 0.0007 AT5G13530 309 / 2e-96 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10018865 [exp] 41 / 0.0007 AT1G21650 573 / 0.0 Preprotein translocase SecA family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G090000 [exp] 331 / 5e-115 AT3G29270 281 / 2e-95 RING/U-box superfamily protein (.1.2) Potri.004G125400 [exp] 303 / 6e-104 AT3G29270 283 / 4e-96 RING/U-box superfamily protein (.1.2) Potri.012G067200 [exp] 256 / 1e-85 AT3G29270 270 / 3e-91 RING/U-box superfamily protein (.1.2) Potri.010G161100 [exp] 208 / 1e-66 AT1G69330 263 / 5e-88 RING/U-box superfamily protein (.1) Potri.019G066500 [exp] 50 / 7e-07 AT1G21651 716 / 0.0 zinc ion binding (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030699 pacid=23155202 polypeptide=Lus10030699 locus=Lus10030699.g ID=Lus10030699.BGIv1.0 annot-version=v1.0 ATGTGGAACTTTGCATCCAATTGTCTTGCAGGAAGTGTCGGTTCAAAAAGCTCTTCAAAGACAACTCAAGCTGCTACTGTTTCTGAATCTTCAGATGACG AAACATCTTCTGTTGTTAGCAGAGAAGAAGGCCTGGAGTGCCCGATATGCTGGGAATCCTTCAACATTGTGGAAAACGTTCCCTATGTCCTGTGGTGTGG CCATACCCTTTGTAAAAACTGCATCTTTGGCCTACAGTGGGCTGTTGTGAAGTTCCCCACATTGCCAGTTCAGCTCCCTCTCTTCATCTCTTGTCCATGG TGCAATGTCTTGTCATTTCGCCTCGTGTACAGAGGAAACCTGAAGTTTCCGCGCAAGAACTACTTCCTACTTTGGATGGTCGAAAGCAAGAACGACAATC AATGCACCCGTACATCTTCTCAATTTGAAGATAATCCCAATGTTTGGTCACCGAATTGCAGTTTGCCGCCAAGAAATCAAGATGACCGTCATGTTGTATC AAGAGGTGAACATAATCATCACCCACGGACGAATCATGTCGATGATGATGATGACCACAGTAACCATCTCCTCAATGTAGGGAGACTGAATTTTTCACTG CAGAAGTCACTGGTTTTCTTCGTTCACCTTACATCAAAGTTCCCTCTGGTCATCATATTCCTTCTCATTATCTTATATGCCATACCTGCCAGTTTCGCTA TTTTGGCATTGTACTTTCTTATCACTGTTCTTTTCGCCATCCCGTCGCTTCTCATACTGTACTTTGCTTACCCTAGTTTGGATTGGCTTGTCAGAGAAAT AATCACTTGA
AA sequence Show only first row Show all	>Lus10030699 pacid=23155202 polypeptide=Lus10030699 locus=Lus10030699.g ID=Lus10030699.BGIv1.0 annot-version=v1.0 MWNFASNCLAGSVGSKSSSKTTQAATVSESSDDETSSVVSREEGLECPICWESFNIVENVPYVLWCGHTLCKNCIFGLQWAVVKFPTLPVQLPLFISCPW CNVLSFRLVYRGNLKFPRKNYFLLWMVESKNDNQCTRTSSQFEDNPNVWSPNCSLPPRNQDDRHVVSRGEHNHHPRTNHVDDDDDHSNHLLNVGRLNFSL QKSLVFFVHLTSKFPLVIIFLLIILYAIPASFAILALYFLITVLFAIPSLLILYFAYPSLDWLVREIIT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29270			RING/U-box superfamily protein...		Lus10030699 [exp]	0	1
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Lus10006054 [exp]	2.0	0.8776
AT3G05010			Protein of unknown function, t...		Lus10033835 [exp]	2.0	0.8891
AT4G04770		ABCI8, ATNAP1, ...	LONG AFTER FR, ARABIDOPSIS THA...		Lus10035874 [exp]	3.5	0.8529
AT2G24820		AtTic55, TIC55-...	translocon at the inner envelo...		Lus10026246 [exp]	5.5	0.8287
AT1G67570			Protein of unknown function (D...		Lus10006430 [exp]	8.9	0.8155
AT3G21700		ATSGP2	Ras-related small GTP-binding ...		Lus10027172 [exp]	10.0	0.8013
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Lus10028713 [exp]	11.4	0.8179
AT5G55560			Protein kinase superfamily pro...		Lus10001739 [exp]	12.6	0.8354
AT1G30090			Galactose oxidase/kelch repeat...		Lus10028121 [exp]	13.6	0.8602
AT3G61800			unknown protein		Lus10030247 [exp]	14.6	0.7850

Compare expression of checked genes

Lus10030699 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.