Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39380 97 / 7e-21 Plant calmodulin-binding protein-related (.1) AT5G15430 84 / 8e-17 Plant calmodulin-binding protein-related (.1) AT5G61260 79 / 3e-15 Plant calmodulin-binding protein-related (.1) AT5G07820 67 / 1e-11 Plant calmodulin-binding protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034717 [exp] 74 / 5e-15 AT5G39380 86 / 1e-19 Plant calmodulin-binding protein-related (.1) Lus10021647 [exp] 77 / 2e-14 AT5G15430 95 / 5e-20 Plant calmodulin-binding protein-related (.1) Lus10000141 [exp] 51 / 2e-06 AT5G15430 57 / 1e-08 Plant calmodulin-binding protein-related (.1) Lus10003472 [exp] 51 / 3e-06 AT5G15430 58 / 2e-08 Plant calmodulin-binding protein-related (.1) Lus10042442 [exp] 50 / 3e-06 AT5G10660 61 / 8e-10 calmodulin-binding protein-related (.1.2) Lus10026227 [exp] 50 / 3e-06 AT5G10660 61 / 7e-10 calmodulin-binding protein-related (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G090200 [exp] 155 / 5e-40 AT5G39380 134 / 4e-33 Plant calmodulin-binding protein-related (.1) Potri.015G049600 [exp] 84 / 1e-16 AT5G39380 94 / 2e-20 Plant calmodulin-binding protein-related (.1) Potri.012G067100 [exp] 67 / 1e-11 AT5G07820 96 / 4e-21 Plant calmodulin-binding protein-related (.1) Potri.018G005500 [exp] 54 / 2e-07 AT5G10660 61 / 8e-10 calmodulin-binding protein-related (.1.2) Potri.006G274600 [exp] 53 / 5e-07 AT5G24880 60 / 2e-09 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07839 [flax] [poplar] CaM_binding Plant calmodulin-binding domain
Representative CDS sequence Show only first row Show all	>Lus10030701 pacid=23155194 polypeptide=Lus10030701 locus=Lus10030701.g ID=Lus10030701.BGIv1.0 annot-version=v1.0 ATGGCTGAAGAGAACATAACTTTGCCAGACATCAGTGGTGTTCTTTATTCAAGAAGAAGCTCTACAGGAAAGTTGACATCTTCAAAGGGTGAAGAAAAGG CTGTCCCCAATTACCTCCGTGCTTCTACCGGTTCGTGTCACGATTTCTGCAAATTTGGGCACAAGCATGCTTCCGAGGAGAAGGAAAGGCGCCCCTTCTT AAGAAGAGGGATGGGCAAACCTCCTGATGGCCACCACCATAACGATCCGGACATCCAGATTTTCGTACCGAGTAAAGTTCGTTCTGAGAAGAACAAAGGG TCTTTGTCATTGCTTTCTAAATCAGCTGACTGCAGCAACTCTGATGCACTAATGGCTGCTAGCCTTTCCAGGAGGAAGAGCTCAGTTCCAGCAGGGATGT TAAGAAAGTCAGTTGACTTCACCAATGTTTCAAAGGTTGGGAAGAACAAGATGTCACCGGATCGAAGGTTAACGGGATCGTTTGATAGTAAACTTTCGGG CTTGATCGGTGCATCCTCTTCCAAAGTGAAGATTATTACATCATCAAGGGAGGAGAAGAAGAAATCCCCACCAACCATTCTCAGGACTTCACCTGATCAG TCACTCAAGAAAGGAAAGTCAACCTCCCAAGCAAAGCTAGATAATCCTTCGAATCAAGCTTCGCGAAGTGCTGAAGTACTGTCCTTGTCAGAAAAGCTTG GCAGTTCCTTAAAACTCAAGTCCGGCAACAATGCAGGAAGGGTAGTAAATGCTGGAAGAAGTAACACTGACTTGGGAACAGGACAGAAATCATCTAAGGT AGCTCCTCTACGGAAACTGCAGATGCCGTCTCCCAAAGTCCCGTTATCATCACCGAAACGTAATGTCTCTGGAGGATTAGCTAGAGCTTTGTCTTCTCCC AGGGTTTCCTTGTCCCCTAGATCTTCTCTTGCTGGAGTTGCTGGCCTAAATGCAGCGAAAAATCGGGGTGGAAAAGTTACATCTGGTTTGATGAAAAGGA ACGAGACCGAGCAGGCAAAGACTGAGAACAAGATTAAGAAGAAGGTAGCAAGTAACGTGCAGCACAAGATTGAGGACAAGACTACTAAGAAGGTGGCTAA CAAGCAAAGAATGAACAAACAAGTTAAGGAAGTTTCCCCTGACATGGTGCAGGAGAAAACCTTGTATGTCATCAAGATGGATACCGAGGACAAACATCTG GAATCCGATCTGAATGAACGTCTGGATGGTGAGACTGAGACTGAGATTTCCCCGCTTCCGGATTCATCCATGAAACCATTGTCCATTCCAGGGTGTTCAT CGTCATCATCTTCTCTTACCAATGAAGATGAAGATGAAGATGACGATGAGGAATCTGAATACAGTCTGACTGATGACGAAGAGCTAGATTCCTTGGACGT TGAAGCACAAAAGAAATGGATCAGAAGGAAGGTGGTTCGTTCGGAAAGCCAAGATCCGCAACCTGTGAAACTGCGTTTCAGGAGGGGGAAGGTGATAGAG ATAAAGTCGGAGAATGAAGGTCCAAGGAAGCTCAAGTTCAGAAAGAGAAGATCTTTGGGTAAGGACCAGAATGCCAAGGAGGTTGAGAGACGTATGAGCT ATCGGTTTAGGGGAGAGGAAGGTGAAGTGAAGAAGGGGGAAGATGATTCGGAGAAAGTGGTTCTGAGACATCAAGACATGGACGGGAAGAAAGATGGACA AGGAGGGCTGTTGTTTAATAATGTGATAGAGGAGACGGCAAGTAAGCTTGCTGAGACTAGGAAGAGCAAGGTCAAGGCTTTGGTGGGTGCTTTTGAAACT GTGATCTCTCTTCAAGATGGAAAGCCCTCCTCAGGAAACGTCAACTTGTGA
AA sequence Show only first row Show all	>Lus10030701 pacid=23155194 polypeptide=Lus10030701 locus=Lus10030701.g ID=Lus10030701.BGIv1.0 annot-version=v1.0 MAEENITLPDISGVLYSRRSSTGKLTSSKGEEKAVPNYLRASTGSCHDFCKFGHKHASEEKERRPFLRRGMGKPPDGHHHNDPDIQIFVPSKVRSEKNKG SLSLLSKSADCSNSDALMAASLSRRKSSVPAGMLRKSVDFTNVSKVGKNKMSPDRRLTGSFDSKLSGLIGASSSKVKIITSSREEKKKSPPTILRTSPDQ SLKKGKSTSQAKLDNPSNQASRSAEVLSLSEKLGSSLKLKSGNNAGRVVNAGRSNTDLGTGQKSSKVAPLRKLQMPSPKVPLSSPKRNVSGGLARALSSP RVSLSPRSSLAGVAGLNAAKNRGGKVTSGLMKRNETEQAKTENKIKKKVASNVQHKIEDKTTKKVANKQRMNKQVKEVSPDMVQEKTLYVIKMDTEDKHL ESDLNERLDGETETEISPLPDSSMKPLSIPGCSSSSSSLTNEDEDEDDDEESEYSLTDDEELDSLDVEAQKKWIRRKVVRSESQDPQPVKLRFRRGKVIE IKSENEGPRKLKFRKRRSLGKDQNAKEVERRMSYRFRGEEGEVKKGEDDSEKVVLRHQDMDGKKDGQGGLLFNNVIEETASKLAETRKSKVKALVGAFET VISLQDGKPSSGNVNL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39380			Plant calmodulin-binding prote...		Lus10030701 [exp]	0	1
AT1G05170			Galactosyltransferase family p...		Lus10031567 [exp]	1.4	0.8778
AT2G42570		TBL39	TRICHOME BIREFRINGENCE-LIKE 39...		Lus10017670 [exp]	2.8	0.8188
AT1G65440		GTB1	global transcription factor gr...		Lus10029079 [exp]	3.9	0.8048
AT3G54260		TBL36	TRICHOME BIREFRINGENCE-LIKE 36...		Lus10026066 [exp]	5.7	0.8384
AT2G40480			Plant protein of unknown funct...		Lus10034211 [exp]	9.2	0.8274
AT1G65440		GTB1	global transcription factor gr...		Lus10029078 [exp]	13.6	0.7085
AT4G23720			Protein of unknown function (D...		Lus10017546 [exp]	15.4	0.7333
AT2G28680			RmlC-like cupins superfamily p...		Lus10005880 [exp]	17.5	0.7561
AT3G03770			Leucine-rich repeat protein ki...		Lus10020303 [exp]	18.1	0.7913
AT1G47670			Transmembrane amino acid trans...		Lus10032751 [exp]	19.5	0.7717

Compare expression of checked genes

Lus10030701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.