Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01040 840 / 0 GAUT13 galacturonosyltransferase 13 (.1.2) AT5G15470 837 / 0 GAUT14 galacturonosyltransferase 14 (.1) AT5G54690 499 / 3e-173 IRX8, GAUT12, LGT6 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) AT3G58790 382 / 3e-127 GAUT15 galacturonosyltransferase 15 (.1) AT3G61130 318 / 1e-100 GAUT1, LGT1 galacturonosyltransferase 1 (.1) AT5G47780 310 / 2e-98 GAUT4 galacturonosyltransferase 4 (.1) AT2G20810 292 / 2e-92 GAUT10, LGT4 galacturonosyltransferase 10 (.1) AT4G38270 296 / 3e-92 GAUT3 galacturonosyltransferase 3 (.1.2) AT3G25140 292 / 6e-92 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G02350 283 / 2e-88 GAUT9 galacturonosyltransferase 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013189 [exp] 950 / 0 AT5G15470 952 / 0.0 galacturonosyltransferase 14 (.1) Lus10032990 [exp] 888 / 0 AT3G01040 955 / 0.0 galacturonosyltransferase 13 (.1.2) Lus10015379 [exp] 774 / 0 AT3G01040 833 / 0.0 galacturonosyltransferase 13 (.1.2) Lus10035836 [exp] 500 / 3e-173 AT5G54690 887 / 0.0 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) Lus10036619 [exp] 414 / 9e-142 AT5G54690 636 / 0.0 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) Lus10041389 [exp] 319 / 1e-101 AT3G61130 1020 / 0.0 galacturonosyltransferase 1 (.1) Lus10009311 [exp] 319 / 3e-101 AT3G61130 1018 / 0.0 galacturonosyltransferase 1 (.1) Lus10036540 [exp] 321 / 7e-101 AT3G61130 1015 / 0.0 galacturonosyltransferase 1 (.1) Lus10038739 [exp] 316 / 4e-100 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G090800 [exp] 850 / 0 AT5G15470 882 / 0.0 galacturonosyltransferase 14 (.1) Potri.004G124500 [exp] 847 / 0 AT5G15470 873 / 0.0 galacturonosyltransferase 14 (.1) Potri.001G416800 [exp] 511 / 1e-177 AT5G54690 851 / 0.0 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) Potri.011G132600 [exp] 503 / 2e-174 AT5G54690 871 / 0.0 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) Potri.014G142000 [exp] 394 / 5e-132 AT3G58790 663 / 0.0 galacturonosyltransferase 15 (.1) Potri.016G001700 [exp] 314 / 3e-99 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1) Potri.014G073800 [exp] 314 / 5e-99 AT3G61130 1011 / 0.0 galacturonosyltransferase 1 (.1) Potri.002G151400 [exp] 312 / 2e-98 AT3G61130 1017 / 0.0 galacturonosyltransferase 1 (.1) Potri.006G001100 [exp] 309 / 3e-98 AT5G47780 776 / 0.0 galacturonosyltransferase 4 (.1) Potri.002G246500 [exp] 295 / 4e-93 AT3G25140 912 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10030703 pacid=23155345 polypeptide=Lus10030703 locus=Lus10030703.g ID=Lus10030703.BGIv1.0 annot-version=v1.0 ATGCAGCTTCACATCTCGCCTAGCATGAGAAGCATCACGATATCAAGCACTAACAACAACAACATCAGCGGCAGCACTAATGGGGGGTTTATTGACTTGA TGAAGATCAAGGTTGCAGCTCGCCACATCTCGTATCGCACTCTTTTCCACACCATCCTCATCCTTGCCTTTTTGTTGCCCTTCGTCTTCATCCTCACTGC CCTCGTCACCCTTGAAGGCGTCAACAACTGCTCCTCCTTTGATTGCTTGGGTAGACGACTTGGGCCAAGGCTTCTTGGCAGGGTTGATGACTCTGGGCAG AGGCTGGTTAAGGACTTGCACAAGATACTAAATCAAGTAAATGCAGAGGAAGTGCCGAATGGCTTAAAGCTCCCAGAATCGTTTAGTCAGCTTGTTTCAG AAATGAAGAACAACCAATATGATGGAAAGACGTTTGCTGTAACGTTGAAAGCGATGATGGAGAAATTTGAAAGGGAAATTAGGGAATCAAAATTTTCGGA GCTGATGAACAAACACTTTGCTGCAAGTTCCATTCCAAAAGGCATCCACTGTCTGTCTTTGCGATTGACTGATGAATATTCCTCTAATGCACATGCACGT CGGCAACTGCCTGCTCCAGAGTTGCTTCCTTTGTTGTCCGACAATACCTATCATCACTTCATACTGTCAACAGACAACATTTTGGCAGCATCAGTTGTTG TGACTTCTACTGTGATGTCATCTAAAGAACCTGAAAAGATCGTATTTCATGTTATTACTGATAAGAAAACATATGCGGGGATGCACTCCTGGTTTGCCTT GAACCCTGTCTCTCCTGCTATCATTGAAGTTAAAGGCGTTCATCAGTTTGACTGGTTAACAAGGGAGAATGTTCCTGTGCTTGAAGCTGTAGAAAATCAT AATAGCATCAGGAACTATTACCATGGGAATCATGTTGCTGGTGCGAATCTCAGCGAAACAACTCCACGTATGTTTGCTTCAAAACTGCAAGCTAGAAGTC CAAAGTACATCTCCTTACTCAACCACCTCCGGATATATATACCTGAGCTATTTCCAAGCCTCGATAAGGTGGTCTTTTTGGACGATGATGTCGTGGTTCA GCGTGATTTGTCTCCACTTTGGGATATTGATCTGAACGGAAAGGTTAATGGTGCTGTGGAAACATGTAAAGGTGACGATGAGTGGGTAATGTCCAAGCGG TTCAAGAACTATTTCAATTTTTCTCATCCCCTCATATCGAAGAACTTGGACGCAGAAGAGTGTGCTTGGGCTTATGGAATGAATATATTTGATCTTCATG CATGGAGGAAGACAAGTAATCTGAAGTCGAACCTGACAATGTGGAAGCTTGGAACCTTGCCTCCGGCTCTGATAGCATTTAAAGGTCATGTGCATGCAAT TGATCCCGAGTGGCATATGCTTGGGTTGGGGTATCAGAATAAAACAGACATTGAGAGTGTGAAAAGGGCAGCAGTTATCCACTACAACGGGCAGTCAAAG CCATGGTTGCCGATCGGGTTTGAGCACCTGCGGCCATTTTGGACCAAGTACGTCAATTACTCTGATGATTTCATACGGAACTGCCACATCATGGAGACGT AG
AA sequence Show only first row Show all	>Lus10030703 pacid=23155345 polypeptide=Lus10030703 locus=Lus10030703.g ID=Lus10030703.BGIv1.0 annot-version=v1.0 MQLHISPSMRSITISSTNNNNISGSTNGGFIDLMKIKVAARHISYRTLFHTILILAFLLPFVFILTALVTLEGVNNCSSFDCLGRRLGPRLLGRVDDSGQ RLVKDLHKILNQVNAEEVPNGLKLPESFSQLVSEMKNNQYDGKTFAVTLKAMMEKFEREIRESKFSELMNKHFAASSIPKGIHCLSLRLTDEYSSNAHAR RQLPAPELLPLLSDNTYHHFILSTDNILAASVVVTSTVMSSKEPEKIVFHVITDKKTYAGMHSWFALNPVSPAIIEVKGVHQFDWLTRENVPVLEAVENH NSIRNYYHGNHVAGANLSETTPRMFASKLQARSPKYISLLNHLRIYIPELFPSLDKVVFLDDDVVVQRDLSPLWDIDLNGKVNGAVETCKGDDEWVMSKR FKNYFNFSHPLISKNLDAEECAWAYGMNIFDLHAWRKTSNLKSNLTMWKLGTLPPALIAFKGHVHAIDPEWHMLGLGYQNKTDIESVKRAAVIHYNGQSK PWLPIGFEHLRPFWTKYVNYSDDFIRNCHIMET

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01040		GAUT13	galacturonosyltransferase 13 (...		Lus10030703 [exp]	0	1
AT5G54830			DOMON domain-containing protei...		Lus10041448 [exp]	1.0	0.8905
AT5G15470		GAUT14	galacturonosyltransferase 14 (...		Lus10013189 [exp]	1.4	0.8791
AT1G31850			S-adenosyl-L-methionine-depend...		Lus10033277 [exp]	4.6	0.8365
AT5G04770		CAT6, ATCAT6	ARABIDOPSIS THALIANA CATIONIC ...		Lus10000962 [exp]	5.7	0.7952
AT1G64650			Major facilitator superfamily ...		Lus10017322 [exp]	6.2	0.8631
AT1G70280			NHL domain-containing protein ...		Lus10030637 [exp]	8.1	0.8190
AT2G42490			Copper amine oxidase family pr...		Lus10019485 [exp]	9.0	0.7432
AT1G67070		PMI2, DIN9	PHOSPHOMANNOSE ISOMERASE 2, DA...		Lus10009165 [exp]	9.6	0.7769
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10025195 [exp]	9.9	0.8233
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10019298 [exp]	13.2	0.8387

Compare expression of checked genes

Lus10030703 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.