Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15610 554 / 0 Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) AT3G02200 545 / 0 Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013192 [exp] 791 / 0 AT5G15610 578 / 0.0 Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Lus10012120 [exp] 49 / 7e-06 AT4G19006 665 / 0.0 Proteasome component (PCI) domain protein (.1) Lus10010423 [exp] 46 / 4e-05 AT4G19006 651 / 0.0 Proteasome component (PCI) domain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G095300 [exp] 634 / 0 AT5G15610 575 / 0.0 Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Potri.004G116700 [exp] 630 / 0 AT5G15610 570 / 0.0 Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01399 [flax] [poplar] PCI PCI domain
Representative CDS sequence Show only first row Show all	>Lus10030706 pacid=23155334 polypeptide=Lus10030706 locus=Lus10030706.g ID=Lus10030706.BGIv1.0 annot-version=v1.0 ATGGCCACCATCGTCCCAACCTCCGAGGAAGATCCCGCCCTCGCAGTTGTCCGTTTCACCTCCGAGCTTGCCTGGGCCGATGCTGGTCCCGAGGTAGCGG AACCACAAGTTACCAGGCTATGTGTGGAGGCACAGGAATGCATGGTGATGGGCAGATGGTTGGACTTGGCCTCCTTGATGCTCACTTCAGCTGACTTGCT GTTCACCAATTCCAAGGTGTCAGAGAAAGGTACATCAGTTTCTTCTCTATGTGGTGTTCATAAAGGCTTCATCAGTTCTTGTATCACTGTGATACTTAAC ATTTTGGCGCTGGAGGAGGTTGATTCATTGATGTTTGTGCATTGTATGTCTTGCGTTCTTCCTTTTTCAACAGACCTTGAATGCATCTTCACTGTCATTT GCAATCTTGTCACGAAGTCTCAAAACCCGGATGAAGCTCTTGAGATGGCGAAGCTGATATCTTCAAAGATAGTTCAACAACCAACTGAGAAGCCTACATT GCGCTTAAAGATCTTGTTCAATCTGTACAATCTTCTGGAGGATTCATATGCACGGTTCTCTGTCTACATGAAGGTCTTGAGTTTAGCATTGAATGGAAAG GTCACAGAGCCCATTGTACCATCACTCAAGAAGATCGATAGTTTTTTGAAAGAATGGAATCTTAATGTCAAGGACCAGAGAGAGCTCTTTCTGGCCATCT CTAATGCACTTAAAGAGACTAAAAGCTCAACTAAAGATGGCTTCAAATTCCTGACAAAATACTTGGCAACTTTTTCTGGTGAGGATGCAATTGCTGAAGC CAAGGAGGAAGCAGTCCGTGCTATTGTTGAATTTGTGAAGGCGCCTGACATGTTTCAGTGTGAGCTGTTAGATATGCCAGCCGTTGCCCAGTTGGAAAAT GATGAAAAATATGCGTTGGTGTATGAACTTCTAAAAGTGTTCTTGACTCAGAGGCTTGAATCCTACTTGAAGTTTGAAGCAGCTAATTCTGCGCTCCTGA AAAGCTACAACCTTGTTCATGAGGATTGCATAGCAAAGATGAGGTTGATGTCACTGGTGGATCTTGCATCTACCCCCTCTAGGAAAATCCCATACTACCT TATCAAGGACACCCTCCAGGTTACTGATGATGAAGTGGAAATTTGGGTAGTAAAGGCAATCACTGCCAAGTTGATTGACTGCAAAATAGACCAGATGAAT GAAGTCGTACTTGTGAGCCGCTCCACGGAGCGCCTATTCGGACAGCACCAGTGGGAAGAGCTTAGAGGGAAACTTGCTATTTGGAGGGTGAATATTGCCG GTGTGATGAACACCATCCAAGCTAACAAGATCGCGGAAGACGGAACTCAACAGGCTATGCAAGGATTGGCGATTCGATAG
AA sequence Show only first row Show all	>Lus10030706 pacid=23155334 polypeptide=Lus10030706 locus=Lus10030706.g ID=Lus10030706.BGIv1.0 annot-version=v1.0 MATIVPTSEEDPALAVVRFTSELAWADAGPEVAEPQVTRLCVEAQECMVMGRWLDLASLMLTSADLLFTNSKVSEKGTSVSSLCGVHKGFISSCITVILN ILALEEVDSLMFVHCMSCVLPFSTDLECIFTVICNLVTKSQNPDEALEMAKLISSKIVQQPTEKPTLRLKILFNLYNLLEDSYARFSVYMKVLSLALNGK VTEPIVPSLKKIDSFLKEWNLNVKDQRELFLAISNALKETKSSTKDGFKFLTKYLATFSGEDAIAEAKEEAVRAIVEFVKAPDMFQCELLDMPAVAQLEN DEKYALVYELLKVFLTQRLESYLKFEAANSALLKSYNLVHEDCIAKMRLMSLVDLASTPSRKIPYYLIKDTLQVTDDEVEIWVVKAITAKLIDCKIDQMN EVVLVSRSTERLFGQHQWEELRGKLAIWRVNIAGVMNTIQANKIAEDGTQQAMQGLAIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15610			Proteasome component (PCI) dom...		Lus10030706 [exp]	0	1
AT2G46290			Transducin/WD40 repeat-like su...		Lus10021857 [exp]	1.0	0.9640
AT3G03960			TCP-1/cpn60 chaperonin family ...		Lus10007430 [exp]	2.0	0.9388
AT3G02530			TCP-1/cpn60 chaperonin family ...		Lus10017585 [exp]	3.5	0.9358
AT5G53480			ARM repeat superfamily protein...		Lus10034318 [exp]	7.7	0.9243
AT5G26830			Threonyl-tRNA synthetase (.1)		Lus10005351 [exp]	10.6	0.9014
AT5G15610			Proteasome component (PCI) dom...		Lus10013192 [exp]	10.7	0.8699
AT5G41970			Metal-dependent protein hydrol...		Lus10008867 [exp]	10.8	0.8801
AT5G15550			Transducin/WD40 repeat-like su...		Lus10024727 [exp]	11.5	0.8928
AT1G10840		TIF3H1	translation initiation factor ...		Lus10020427 [exp]	12.0	0.8904
AT4G31120		PRMT5, SKB1 ,AT...	PROTEIN ARGININE METHYLTRANSFE...		Lus10009545 [exp]	14.5	0.9115

Compare expression of checked genes

Lus10030706 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.