Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29770 464 / 2e-163 ATMES11 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) AT1G26360 396 / 7e-136 ATMES13, SP1L1 ARABIDOPSIS THALIANA METHYL ESTERASE 13, methyl esterase 13 (.1) AT1G69240 392 / 3e-134 RHS9, ATMES15 ROOT HAIR SPECIFIC 9, ARABIDOPSIS THALIANA METHYL ESTERASE 15, methyl esterase 15 (.1) AT1G33990 287 / 2e-94 ATMES14 methyl esterase 14 (.1) AT4G09900 280 / 8e-92 ATMES12 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) AT5G58310 178 / 2e-53 ATMES18 ARABIDOPSIS THALIANA METHYL ESTERASE 18, methyl esterase 18 (.1) AT3G10870 174 / 2e-51 ATMES17, MES17 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1) AT2G23560 172 / 6e-51 ATMES7 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) AT4G16690 169 / 9e-50 ATMES16 ARABIDOPSIS THALIANA METHYL ESTERASE 16, methyl esterase 16 (.1) AT2G23610 162 / 2e-47 ATMES3 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013193 [exp] 671 / 0 AT3G29770 493 / 8e-175 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Lus10037068 [exp] 358 / 9e-122 AT1G69240 365 / 5e-124 ROOT HAIR SPECIFIC 9, ARABIDOPSIS THALIANA METHYL ESTERASE 15, methyl esterase 15 (.1) Lus10036917 [exp] 337 / 2e-109 AT1G26370 650 / 0.0 RNA helicase family protein (.1) Lus10005298 [exp] 300 / 1e-99 AT4G09900 541 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Lus10003511 [exp] 294 / 4e-97 AT4G09900 526 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Lus10009489 [exp] 254 / 1e-82 AT4G09900 378 / 2e-132 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Lus10034253 [exp] 169 / 1e-49 AT3G10870 288 / 1e-97 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1) Lus10029011 [exp] 169 / 1e-49 AT3G10870 293 / 1e-99 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1) Lus10022467 [exp] 160 / 2e-46 AT3G50440 238 / 2e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G116500 [exp] 562 / 0 AT3G29770 499 / 1e-177 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Potri.017G096900 [exp] 556 / 0 AT3G29770 463 / 2e-163 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Potri.008G096900 [exp] 387 / 4e-133 AT1G26360 379 / 2e-129 ARABIDOPSIS THALIANA METHYL ESTERASE 13, methyl esterase 13 (.1) Potri.019G077400 [exp] 306 / 4e-102 AT4G09900 547 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Potri.013G104700 [exp] 302 / 2e-100 AT4G09900 541 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Potri.007G036700 [exp] 174 / 5e-52 AT2G23610 244 / 8e-81 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) Potri.019G131100 [exp] 173 / 2e-51 AT3G10870 323 / 9e-112 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1) Potri.009G107500 [exp] 172 / 9e-51 AT3G50440 240 / 1e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.007G036800 [exp] 171 / 1e-49 AT2G23560 230 / 2e-74 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) Potri.009G107200 [exp] 169 / 1e-49 AT3G50440 244 / 4e-80 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10030707 pacid=23155427 polypeptide=Lus10030707 locus=Lus10030707.g ID=Lus10030707.BGIv1.0 annot-version=v1.0 ATGGGGAACCTTTGCACTTGTTTCGCCCCCAAACCCACTGTCAAGAGTAACCGCCGACCGGTGAAGCGGATACAGGGCGGCAATTCTTCATCCCATCAAC AACACCACAATCCAAACTCTAGTAACCGTTTTGCTAGGGTCCGATCCGCTAGAAAAGACAGCAGCGATTCCTCAATTCAGGAGCAGGCTTTGGCTGCTGC TCTTCTGTTCAAGCATCACAACGGAGGAGGAGGAGGGCTAGGTTCGTTGCCCTTTGACCGTTCTTCCTCCGTCAGATACCCTAATAATCTAGGGTCCAAG AAGAATCCGTTGCCAAGAAGTTCAAGCACCAGAGCTCGGTCACTTACTGACCCTTTGTTGGATCCTCACCAATTAGTTAACCAGGATATCAAACTTGATG ATCTTGAGACCAAGCATTTTGTGCTTGTACATGGCGGGGGGTTTGGTGCTTGGTGTTGGTACAAAACTATAGCCCTTCTGGAAGAGAGTGGTTTCAGAGT TACGGCAATTGACTTGACAGGTTCTGGAGTTAGTTCTTTTGATACAAATGGCATCACCAGTCTTTCTCAATATGTGAAGCCACTTACTGATTTTCTTGGA GAGCTTGCTGATGAGGAGAAGGTAATCTTGGTCGGGCACGATTTTGGCGGTGCTTGCATGTCATTTGCAATGGAGTTGTTTCCACTCAAAATATCCAAGG CTATTTTTCTAGCTGCTGCTATGTTGGTTAATGGACAAAGTACTCTTGACATGTTCTCCAAGCAGAAGTTATTGCAGTCAGGTGGAGATGACCTAATGCA AAAGGCACAAGTTTTTGTATATGCAAATGGAAATGACCATCCTCCAACTGCAATTGATCTGAACAAGTCGTTGCTGCGAGACTTGATGTTCAACCAGAGC CCTGCCAAGGACATTGCATTAGCCTCCGTATCAATGAGGCTCATCCCGTTCGCTCCGGTCCTGGAGAAGCTCTCCCTCTCTGATGCCAACTACGGGACTG TCAGACGGTTCTACATCGAAACTTCGGAAGACAATGCCATACCAATCACCTTACAAGAGAGCATGATAAACACAAGTCCACCGCAGAAAGTGTTCCGGTT AAAAGGTGGGGATCACTCGCCGTTCTTCTCAAAGCCTCAAGCTTTGCACAAGATACTGATAGAGATTTCAAAGATATCATCATCAGTTGAAGATGAGAAA AAATAA
AA sequence Show only first row Show all	>Lus10030707 pacid=23155427 polypeptide=Lus10030707 locus=Lus10030707.g ID=Lus10030707.BGIv1.0 annot-version=v1.0 MGNLCTCFAPKPTVKSNRRPVKRIQGGNSSSHQQHHNPNSSNRFARVRSARKDSSDSSIQEQALAAALLFKHHNGGGGGLGSLPFDRSSSVRYPNNLGSK KNPLPRSSSTRARSLTDPLLDPHQLVNQDIKLDDLETKHFVLVHGGGFGAWCWYKTIALLEESGFRVTAIDLTGSGVSSFDTNGITSLSQYVKPLTDFLG ELADEEKVILVGHDFGGACMSFAMELFPLKISKAIFLAAAMLVNGQSTLDMFSKQKLLQSGGDDLMQKAQVFVYANGNDHPPTAIDLNKSLLRDLMFNQS PAKDIALASVSMRLIPFAPVLEKLSLSDANYGTVRRFYIETSEDNAIPITLQESMINTSPPQKVFRLKGGDHSPFFSKPQALHKILIEISKISSSVEDEK K

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29770		ATMES11	ARABIDOPSIS THALIANA METHYL ES...		Lus10030707 [exp]	0	1
AT4G02940			oxidoreductase, 2OG-Fe(II) oxy...		Lus10029637 [exp]	1.0	0.7139
AT4G26180			Mitochondrial substrate carrie...		Lus10032690 [exp]	5.2	0.6286
AT3G12570		FYD	FYD (.1.2.3.4)		Lus10040301 [exp]	6.9	0.6802
AT3G17940			Galactose mutarotase-like supe...		Lus10026181 [exp]	10.7	0.6874
AT5G27380		GSHB, GSH2	glutathione synthetase 2 (.1)		Lus10029976 [exp]	12.2	0.6862
AT5G24810			ABC1 family protein (.1.2)		Lus10026970 [exp]	35.9	0.6476
AT5G03330			Cysteine proteinases superfami...		Lus10001404 [exp]	40.5	0.6143
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10043271 [exp]	42.0	0.6536
AT4G20780		CML42	calmodulin like 42 (.1)		Lus10035611 [exp]	60.7	0.6040
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041668 [exp]	61.0	0.6015

Compare expression of checked genes

Lus10030707 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.