Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26210 390 / 4e-131 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) AT1G13110 372 / 5e-124 CYP71B7 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) AT3G26300 367 / 4e-122 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT5G25120 367 / 5e-122 CYP71B11 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) AT5G25140 365 / 2e-121 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) AT3G26330 363 / 9e-121 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G26310 362 / 5e-120 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT3G26320 361 / 7e-120 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT5G25180 360 / 1e-119 CYP71B14 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1) AT1G13080 360 / 2e-119 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013194 [exp] 826 / 0 AT5G25120 387 / 9e-130 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Lus10012767 [exp] 670 / 0 AT3G26210 386 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10018263 [exp] 519 / 0 AT5G25140 393 / 5e-132 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) Lus10016601 [exp] 516 / 3e-180 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10026252 [exp] 518 / 1e-175 AT5G25120 383 / 2e-123 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Lus10002885 [exp] 505 / 1e-175 AT3G48280 396 / 2e-133 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10042815 [exp] 493 / 3e-171 AT1G13110 396 / 3e-133 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10009903 [exp] 484 / 1e-167 AT5G57260 376 / 1e-125 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) Lus10029035 [exp] 483 / 7e-167 AT1G13110 402 / 1e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G075000 [exp] 500 / 3e-174 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.008G223500 [exp] 493 / 4e-171 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074900 [exp] 491 / 1e-170 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130850 [exp] 488 / 3e-169 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 488 / 3e-169 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074300 [exp] 484 / 7e-168 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130800 [exp] 483 / 2e-167 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365100 [exp] 478 / 1e-165 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364600 [exp] 461 / 5e-159 AT5G25120 352 / 2e-116 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Potri.012G089900 [exp] 431 / 7e-147 AT3G48280 429 / 1e-146 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10030708 pacid=23155409 polypeptide=Lus10030708 locus=Lus10030708.g ID=Lus10030708.BGIv1.0 annot-version=v1.0 ATGTTAATTCCGTTATTGGGTTTGACACTATTATTATTTGTTTTGTTTCGGAGACGACCCCGCCGAGCAACCGGAGGAGCGGCTCCTCCTCCGGGGCCAT GGAAGCTGCCTATAATCGGCAACCTCCACCAGTTGATGATGAGCCCTCACGGAGCCCACCATCGGCTGAGGGACTTGGCCCAAAAGTACGGGCCAGTGAT GCAGCTCCGGCTAGGGGAGAGGATGAACGTCATCATCTCCTCCCCTGAAGCCGCGAAACAGGCGATGAAAACTCATGACCTCGTTTTCGCTTCGAGGCCT CGAGACATGTTGGCCCCGAGCATCATATTCTACGGCTGTCAGGACGTGGCCTTCGCCCCTTACGGAGAGCACTGGAGACAGATGCGTAAGATCTGCATCG TCGAGCTCCTCAGTGCCAAGCGCGTCTCTTCGTTTCGTGTCATTCGAGAAGAGGAGGTGTCGAATCTCGTCGCTCGCCTTTCTCGATGCAGCGAAGAGGA AGAGGGTGTGAATATGAGGCGGATGTTGACTTCGCTATCGAGTAATGTGACTTCGAGGTCGGCTTTTGGTACGGTGGAGAAGGCACAAAGGGAAGCTTTC GTGGGGTTGGTTGACAAAATCATAGAGACACATGAAGGTTTCGGAGTCTCCGATCTCTTCCCGTCACTGAAATTCCTACCGGTCGTTACTGGGTTTCGCG GGAAGCTCGAGTCGATTCACCGAGCAGCCGATTCCATACTTAAGGAAATCATCAACCAACACAGAGACAGAATTAAAAGAAGATCAGATGATGATCAAGA ACTGGAAGGAAGAGCACAAAAACACATGGAAACAGAGGACATTGTTGACATTCTTCTCAATCTCCAGGAAACTGGTGACCTGTCACTCCCCTTAACGGAC GATGTCATCAAAGCCGTTGTTTTTGACATGTTTATCGGTGGCGTTGAGACCTCATCGTCAACAATCGAATGGACTATGTCGGAGATAGTAAGAGATCCAA GGGTGCTAGAGCTAGCCCAACAAGAGGTGAGACGAGTTTTCGGCACCAAGGGAAAAGTGGACGAAGATGGACTTCACGAGTTGAGCTACTTGAACGCCGT AATCAAGGAGAGCCTGCGGATGCACCCTGACGGTCCTTTACTTCTCCCACGAGAAACCCAGGCGACAGTCACGGTCAACGGGTTTGAGGTCCCTGCCAAC ACCAGGGTTCTTGTCAATGTCTGGGCTATCGGAAGAGATCCTCGTTACTGGATCAATCCTAATGTTTTTCAACCAGAGAGGTTTTTGGACTCCTCAATTG ACTATAAGGGAACTCACTTTGAGTTCATACCGTTTGGTGCTGGACGGAGGATATGTCCTGGTATGCTCTTTGGGTTGGCTATCGTCCAGCTCACGCTGGC GAATTTGTTGTTCCATTTTGACTGGAAACCGCCTGCTGGATTAGCCACACTCGAGGACTTGGACATGACCGAACACTTCGGCATCTCGCTCACAAGAAAA CATATATTGCGTCTTGTCCCTGTTTCACTTGCTCGTTAA
AA sequence Show only first row Show all	>Lus10030708 pacid=23155409 polypeptide=Lus10030708 locus=Lus10030708.g ID=Lus10030708.BGIv1.0 annot-version=v1.0 MLIPLLGLTLLLFVLFRRRPRRATGGAAPPPGPWKLPIIGNLHQLMMSPHGAHHRLRDLAQKYGPVMQLRLGERMNVIISSPEAAKQAMKTHDLVFASRP RDMLAPSIIFYGCQDVAFAPYGEHWRQMRKICIVELLSAKRVSSFRVIREEEVSNLVARLSRCSEEEEGVNMRRMLTSLSSNVTSRSAFGTVEKAQREAF VGLVDKIIETHEGFGVSDLFPSLKFLPVVTGFRGKLESIHRAADSILKEIINQHRDRIKRRSDDDQELEGRAQKHMETEDIVDILLNLQETGDLSLPLTD DVIKAVVFDMFIGGVETSSSTIEWTMSEIVRDPRVLELAQQEVRRVFGTKGKVDEDGLHELSYLNAVIKESLRMHPDGPLLLPRETQATVTVNGFEVPAN TRVLVNVWAIGRDPRYWINPNVFQPERFLDSSIDYKGTHFEFIPFGAGRRICPGMLFGLAIVQLTLANLLFHFDWKPPAGLATLEDLDMTEHFGISLTRK HILRLVPVSLAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26210		CYP71B23	"cytochrome P450, family 71, s...		Lus10030708 [exp]	0	1
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10029369 [exp]	3.5	0.9830
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022191 [exp]	4.2	0.9811
AT3G62650			unknown protein		Lus10017613 [exp]	4.2	0.9831
AT3G15980			Coatomer, beta' subunit (.1.2....		Lus10026094 [exp]	5.5	0.9671
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10033633 [exp]	5.9	0.9848
AT3G48320		CYP71A21	"cytochrome P450, family 71, s...		Lus10019460 [exp]	8.8	0.9840
AT2G30770		CYP71A13	cytochrome P450, family 71, su...		Lus10019459 [exp]	10.5	0.9816
AT4G23690			Disease resistance-responsive ...		Lus10024715 [exp]	11.0	0.9806
AT5G57510			unknown protein		Lus10033559 [exp]	12.0	0.9663
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10034626 [exp]	15.2	0.9808

Compare expression of checked genes

Lus10030708 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.