Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01180 315 / 2e-107 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013195 [exp] 502 / 0 AT1G01180 353 / 2e-122 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10010109 [exp] 325 / 9e-111 AT1G01180 397 / 1e-139 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10012612 [exp] 131 / 3e-38 AT1G01180 181 / 3e-58 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G177500 [exp] 317 / 6e-108 AT1G01180 383 / 4e-134 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.014G103800 [exp] 314 / 3e-107 AT1G01180 373 / 2e-130 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF04989 [flax] [poplar] CmcI Cephalosporin hydroxylase
Representative CDS sequence Show only first row Show all	>Lus10030709 pacid=23155326 polypeptide=Lus10030709 locus=Lus10030709.g ID=Lus10030709.BGIv1.0 annot-version=v1.0 ATGAAAGACGACAAAAGCCTCCACGTAAGCAAAAAGTACAGAAAACCAACAGCTTCCAAATGGCGATCAATTCTCTCCCCGGCATTTAACCTATCCCTCC TCCTCCTATCCTTCTCCCTCGGCTACTTCATCTCCTCCTCCTCCTTTTTCTCCGCCGCCGACGACACCACCACCTCTTCCTCCACCACCTCTTCCGCCGC CCATCTCGGCGAACCCGTACCCCTGCCGACTCAGCTCGACAACTTCCTCATCTCGTCACACTGCGCCGACCCTATGCCCATCGACCTCATCCGTCAGACC CTAATTGACCGCATCTACAACGGCACTTCCCCTTTCGAAGACTTCCCGCCTCCGCACGTCGCCAACGCCCTCCGCCACCGCAGCCTCAAAGGCTGGGGAT CGAAGCGACCGGTTTTCAAGAACCTTATCGATAGGGTTCGCCCCAAGGTCATCATCGAGGTTGGGACCTTCCTTGGCGCGTCTACCGTGCATATGGCCAA CCTGGCGCGCCAGCTAGGACTCGACGACACGATCATCCTCTGCATCGATGACTTCCGTGGCTGGCCGGGATTTCAGGAGGACTTCCCGTTCATAAAGCAC GTGAACGGAGACAACCTGCTGCTGTACCAGTTCATGCAGAACGCCGTGAACACCAACGTGTCCGACTCGGTTCTGCCCGTTCCATACTCGAGCAGCTCGT CGCTGTCCAAGCTGTGCGAGTGGGGGGTGACTGCTGATCTGATCGAGATCGATGCGGGTCACGGGTTTAACTCGGTTTGGTCGGATATCAACAATGCGTA TCGGCTGCTGAGACCCGGTGGGGTGATGTTCGGCCATGATTATTTCCTCATGAGTGATAACCGGGCGGTGAGGCGGGCGGTTAATCTGTTTGCCCAGATT TATGGGCTTCAGGTCGAAACCGATGGCGAGCATTGGGTGCTTCATACCTCCTGA
AA sequence Show only first row Show all	>Lus10030709 pacid=23155326 polypeptide=Lus10030709 locus=Lus10030709.g ID=Lus10030709.BGIv1.0 annot-version=v1.0 MKDDKSLHVSKKYRKPTASKWRSILSPAFNLSLLLLSFSLGYFISSSSFFSAADDTTTSSSTTSSAAHLGEPVPLPTQLDNFLISSHCADPMPIDLIRQT LIDRIYNGTSPFEDFPPPHVANALRHRSLKGWGSKRPVFKNLIDRVRPKVIIEVGTFLGASTVHMANLARQLGLDDTIILCIDDFRGWPGFQEDFPFIKH VNGDNLLLYQFMQNAVNTNVSDSVLPVPYSSSSSLSKLCEWGVTADLIEIDAGHGFNSVWSDINNAYRLLRPGGVMFGHDYFLMSDNRAVRRAVNLFAQI YGLQVETDGEHWVLHTS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01180			S-adenosyl-L-methionine-depend...		Lus10030709 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036819 [exp]	1.0	0.9888
AT1G74920		ALDH10A8	aldehyde dehydrogenase 10A8 (....		Lus10004239 [exp]	1.7	0.9720
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10000208 [exp]	2.8	0.9798
					Lus10002764 [exp]	3.0	0.9617
					Lus10002317 [exp]	5.3	0.9717
AT5G02890			HXXXD-type acyl-transferase fa...		Lus10000592 [exp]	6.3	0.9604
AT4G37070		AtPLAIVA, PLP1,...	phospholipase A IVA, Acyl tran...		Lus10019637 [exp]	6.3	0.9717
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10015734 [exp]	6.5	0.9716
AT3G18060			transducin family protein / WD...		Lus10032444 [exp]	8.1	0.9351
AT4G37070		AtPLAIVA, PLP1,...	phospholipase A IVA, Acyl tran...		Lus10000279 [exp]	8.8	0.9694

Compare expression of checked genes

Lus10030709 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.