Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39420 424 / 7e-136 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006813 [exp] 587 / 0 AT4G39420 1662 / 0.0 unknown protein Lus10005786 [exp] 578 / 0 AT4G39420 3258 / 0.0 unknown protein Lus10008760 [exp] 192 / 1e-61 AT4G39420 142 / 1e-39 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G086100 [exp] 488 / 3e-158 AT4G39420 3493 / 0.0 unknown protein Potri.007G078650 [exp] 480 / 3e-155 AT4G39420 3458 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030711 pacid=23155305 polypeptide=Lus10030711 locus=Lus10030711.g ID=Lus10030711.BGIv1.0 annot-version=v1.0 ATGCGCCTATCTGAGGCTTCAGCACATCTGGGTTCATTTTCTGCTAGGATAAGGGATGAAGCATCTAGCTCTCAAACAAATGTTGGTAGAGAGGCATCAG TTGGCGTACAATGGATAAGTTCGACTGCTGTAAGAGCTGCTGATGCCATGCTTTCAACGTGTCCCTCTGCTTATGAGAAGAGGTGCCTACTACAGTTGCT TGCAGCGACTGAGTTTGGTGATGGAGGTTCTGCAGCAACATATTATCGGCAACTTTATTGGAAGATTAATTTAGCAGAGCCTTCATTGCGCAAGGGCGAC AATGTAAATCTTGGAGATGAGTCTCTAGATGATGCTTCACTTCTAGAGGCTCTGGAAAAGAATGGATATTGGGAGCAGGCACGTAACTGGGCAAGGCAGT TAGGGGCCAGTGGAGGAACTTGGAAATCAGCCGTTCATCATGTCACTGAAACTCAGGCTGAATCAATGGTGGCTGAGTGGAAGGAGTTTCTTTGGGATGT CCCAGAAGAGAGAGTTGCTTTGTGGGGTCACTGTCAAACGCTGTTCATCAGATATTCATTCCCTCCTCTGCAAGCCGGCTTGTTTTTCCTGAAGCACGCT GAAGCAGTGGAGAAAGACCTTCCTGCAAAAGAGCTCCATGAACTTCTGCTTCTTTCTCTTCAATGGTTAAGTGGGATGATAACCTTGTCTCAGCCAGTGT ATCCGTTGCATCTTCTTCGCGAAATCGAGACTAGAGTGTGGCTACTAGCGGTCGAATCCGAGGCTCAGATAAAATGCGACGGGGACTTCGTTTCAACTTC TTCAACCCGAGATCCTGTGGCTGGACATCCCTCCAACATGATTGACAAGACAGCAAGCTTGGTGGGCAAGATGGACAGACATATCAATTCCATGAAGAGT AGCTGA
AA sequence Show only first row Show all	>Lus10030711 pacid=23155305 polypeptide=Lus10030711 locus=Lus10030711.g ID=Lus10030711.BGIv1.0 annot-version=v1.0 MRLSEASAHLGSFSARIRDEASSSQTNVGREASVGVQWISSTAVRAADAMLSTCPSAYEKRCLLQLLAATEFGDGGSAATYYRQLYWKINLAEPSLRKGD NVNLGDESLDDASLLEALEKNGYWEQARNWARQLGASGGTWKSAVHHVTETQAESMVAEWKEFLWDVPEERVALWGHCQTLFIRYSFPPLQAGLFFLKHA EAVEKDLPAKELHELLLLSLQWLSGMITLSQPVYPLHLLREIETRVWLLAVESEAQIKCDGDFVSTSSTRDPVAGHPSNMIDKTASLVGKMDRHINSMKS S

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39420			unknown protein		Lus10030711 [exp]	0	1
AT4G39420			unknown protein		Lus10005786 [exp]	2.0	0.9594
AT2G35630		GEM1, MOR1	MICROTUBULE ORGANIZATION 1, AR...		Lus10038405 [exp]	5.7	0.9398
AT3G47890			Ubiquitin carboxyl-terminal hy...		Lus10008630 [exp]	8.4	0.9262
AT3G50370			unknown protein		Lus10019351 [exp]	9.2	0.9305
AT3G60920			unknown protein		Lus10009306 [exp]	9.3	0.9357
AT2G45540			WD-40 repeat family protein / ...		Lus10009305 [exp]	10.2	0.9320
AT4G39850		AtABCD1, ACN2, ...	PEROXISOME DEFECTIVE 3, COMATO...		Lus10041690 [exp]	10.4	0.9213
AT5G14720			Protein kinase superfamily pro...		Lus10014542 [exp]	11.2	0.8864
AT3G13300		VCS	VARICOSE, Transducin/WD40 repe...		Lus10038767 [exp]	11.4	0.8599
AT1G17500			ATPase E1-E2 type family prote...		Lus10006881 [exp]	12.0	0.8995

Compare expression of checked genes

Lus10030711 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.