Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02300 690 / 0 Regulator of chromosome condensation (RCC1) family protein (.1) AT5G63860 124 / 6e-31 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) AT5G16040 112 / 7e-27 Regulator of chromosome condensation (RCC1) family protein (.1) AT4G14368 111 / 9e-26 Regulator of chromosome condensation (RCC1) family protein (.1) AT1G76950 110 / 3e-25 PRAF1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT3G02510 106 / 5e-25 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) AT1G69710 108 / 9e-25 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G60870 103 / 5e-24 RUG3 RCC1/UVR8/GEF-like 3, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2), Regulator of chromosome condensation (RCC1) family protein (.3) AT5G12350 103 / 2e-23 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT3G23270 103 / 5e-23 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013197 [exp] 838 / 0 AT3G02300 711 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10036737 [exp] 124 / 5e-30 AT1G69710 974 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10039618 [exp] 120 / 1e-29 AT5G63860 715 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10029536 [exp] 120 / 1e-29 AT5G63860 642 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10037192 [exp] 119 / 2e-28 AT1G69710 986 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10033543 [exp] 111 / 2e-26 AT3G02510 648 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10042215 [exp] 109 / 9e-26 AT5G60870 547 / 0.0 RCC1/UVR8/GEF-like 3, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2), Regulator of chromosome condensation (RCC1) family protein (.3) Lus10027273 [exp] 105 / 6e-24 AT4G14368 1269 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10038991 [exp] 105 / 9e-24 AT4G14368 1265 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G099900 [exp] 741 / 0 AT3G02300 711 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.007G100200 [exp] 123 / 1e-30 AT5G63860 738 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Potri.017G113200 [exp] 111 / 8e-27 AT5G16040 676 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.004G101800 [exp] 111 / 8e-27 AT5G16040 665 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.017G139600 [exp] 114 / 1e-26 AT1G65920 937 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.004G080900 [exp] 110 / 2e-25 AT1G65920 940 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.008G167500 [exp] 109 / 4e-25 AT4G14368 1266 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.004G000600 [exp] 106 / 1e-24 AT5G60870 534 / 0.0 RCC1/UVR8/GEF-like 3, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2), Regulator of chromosome condensation (RCC1) family protein (.3) Potri.002G070300 [exp] 102 / 6e-23 AT5G42140 1422 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.005G190000 [exp] 101 / 2e-22 AT5G42140 1407 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00415 [flax] [poplar] RCC1 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Lus10030712 pacid=23155354 polypeptide=Lus10030712 locus=Lus10030712.g ID=Lus10030712.BGIv1.0 annot-version=v1.0 ATGGATATCAACCAAATTCTTGGGGAGAGCTCAAAGTCTGGAATCCTGCCCACCAAGAGCGCCATTTATGCCTGGGGTTATAACCACAGCGGCCAAACGG CAAGGAAAGGCGAAGAGCGGCAATTGCGGATCCCAAAGCAGCTTCCTCCTCACCTATTCGGCTGTCCAGCTCGCAACAATGCCCGCTGGCTGGATATTGC TTGTGGCCGGGAGCACACCGCCGCCGTCGCCTCCGATGGCTCTCTTTTCACTTGGGGGGCTAATGAATTTGGTCAATTGGGGGATGGGTTTGAAGAGGGC AGCAAGTACCCTAAGAGAGTAAAGCAATTACAGTCTGAGTTTGTGAAATCTGTATCCTGTGGGGCGCATTGCACTGCTGCTATTGCAGCACCACGTGATA ACGATGGGACAATCTCAACAAGTAGACTATGGGTTTGGGGACAAAACCAGGGATCAAATTTGCCACGGCCGTTTTGGGGTGCCTTCACACCAAACACGAA AATGAGACAGGTATCCTGTGGTGCAGCTCACGTGGTGGTCTTATCAGAAGAGGGACTACTGCAGGCTTGGGGATATAATGAACATGGCCAGCTAGGTCGA GGGGTTACTTGTGAAGGACTACAGCCGGCTCGAGTAATTACTGCTTATGCAAAGTTTCTTGATGATGCTCCAGAACTTGTGAAGATAACCCAAGTGTCAT GTGGAGAGTACCACTCAGCTGCCATATGTGAAATGGGCGAGGTGTATACTTGGGGCCTTGGAAGTATGGGTCAACTAGGGCACACTTCCCTTCAATCTGG GGATAAAGAGTTACTGCCGAGGCGAGTAGTTTCTCTTGATGGCATTGCCATAAAGGATGTTGCATGTGGAGGAGTGCATACTTGCGCAGTTAGCGAAAAG GGAGCGCTTTATGCTTGGGGTGGTGGCCAAGCTGGTCAACTAGGCTTAGGACCTCAAGCTACGTCATTTTCGTTCATTCCCAGCGATTCAGATTCCTTCC TCAGGAATCTCCCTGTTTTGGTTGTCCCTGATGGAGTGAAACATGTAGCCTGTGGACATTCTCATACACTTGCTTCTTTGAAGGATGGAAGGATCCATGG ATGGGGTTACAATAGCTACGGCCAGGCAGCGAACGAGAAATCAACATATGCTTGGTATCCATCACCGGTCGATTGGTGCGTAGGGGAAGTGAGGAAACTA GCTGCTGGCGGAGGCCATTCCGCTGTGCTGACTGATGCTTGTTCCTTGAAAGAACTCTGCGAGTTTAGACTTGCAGATGAGGTGAAGTTATCAAATGCAT TAAAGGTCGAAGATGTCGCGTCCAGGACCGGAGCGGACGCTTTAGCTCGTCTCTGTAAACGGCTGAGGCAGCATATGGTTGATCTCGGAGATGAGGACTA TGAAGATGTTGTAGACAAATAG
AA sequence Show only first row Show all	>Lus10030712 pacid=23155354 polypeptide=Lus10030712 locus=Lus10030712.g ID=Lus10030712.BGIv1.0 annot-version=v1.0 MDINQILGESSKSGILPTKSAIYAWGYNHSGQTARKGEERQLRIPKQLPPHLFGCPARNNARWLDIACGREHTAAVASDGSLFTWGANEFGQLGDGFEEG SKYPKRVKQLQSEFVKSVSCGAHCTAAIAAPRDNDGTISTSRLWVWGQNQGSNLPRPFWGAFTPNTKMRQVSCGAAHVVVLSEEGLLQAWGYNEHGQLGR GVTCEGLQPARVITAYAKFLDDAPELVKITQVSCGEYHSAAICEMGEVYTWGLGSMGQLGHTSLQSGDKELLPRRVVSLDGIAIKDVACGGVHTCAVSEK GALYAWGGGQAGQLGLGPQATSFSFIPSDSDSFLRNLPVLVVPDGVKHVACGHSHTLASLKDGRIHGWGYNSYGQAANEKSTYAWYPSPVDWCVGEVRKL AAGGGHSAVLTDACSLKELCEFRLADEVKLSNALKVEDVASRTGADALARLCKRLRQHMVDLGDEDYEDVVDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02300			Regulator of chromosome conden...		Lus10030712 [exp]	0	1
AT1G31880		BRX, NIP3;1, NL...	BREVIS RADIX, DZC (Disease res...		Lus10007898 [exp]	2.0	0.8448
AT3G17950			unknown protein		Lus10006150 [exp]	3.7	0.8360
AT5G17400		ER-ANT1	endoplasmic reticulum-adenine ...		Lus10034658 [exp]	6.2	0.8276
AT4G14340		CKL11, CKI1	CASEIN KINASE I-LIKE 11, casei...		Lus10011812 [exp]	7.3	0.8152
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10011737 [exp]	10.7	0.7818
AT5G19590			Protein of unknown function, D...		Lus10033088 [exp]	11.2	0.7767
AT3G61860		ATRSP31, At-RS3...	arginine/serine-rich splicing ...		Lus10005986 [exp]	14.9	0.7870
AT1G04880	ARID		HMG (high mobility group) box ...		Lus10007127 [exp]	16.5	0.7627
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10037080 [exp]	21.4	0.7768
AT2G28350	ARF	ARF10	auxin response factor 10 (.1)		Lus10016090 [exp]	21.8	0.7753

Compare expression of checked genes

Lus10030712 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.