Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21080 572 / 0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) AT1G76700 556 / 0 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G77020 405 / 4e-139 DNAJ heat shock N-terminal domain-containing protein (.1) AT4G39150 357 / 1e-120 DNAJ heat shock N-terminal domain-containing protein (.1.2) AT2G21510 355 / 6e-120 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G48030 66 / 2e-11 GFA2 gametophytic factor 2 (.1) AT5G25530 66 / 2e-11 DNAJ heat shock family protein (.1) AT2G22360 66 / 3e-11 DNAJ heat shock family protein (.1) AT1G28210 65 / 5e-11 ATJ1 DNAJ heat shock family protein (.1.2) AT1G59725 64 / 5e-11 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013198 [exp] 818 / 0 AT1G21080 580 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Lus10042774 [exp] 403 / 7e-138 AT1G77020 497 / 1e-176 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10017472 [exp] 368 / 6e-125 AT4G39150 519 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10028809 [exp] 367 / 7e-125 AT4G39150 517 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10041972 [exp] 350 / 5e-118 AT4G39150 534 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10029744 [exp] 352 / 7e-118 AT1G77020 452 / 6e-159 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10017980 [exp] 342 / 6e-115 AT4G39150 532 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10035855 [exp] 71 / 8e-13 AT5G48030 524 / 0.0 gametophytic factor 2 (.1) Lus10036638 [exp] 70 / 2e-12 AT5G48030 516 / 0.0 gametophytic factor 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G000300 [exp] 655 / 0 AT1G21080 602 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.005G260400 [exp] 647 / 0 AT1G21080 585 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.002G074600 [exp] 410 / 5e-141 AT1G77020 593 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G185800 [exp] 402 / 9e-138 AT1G77020 582 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.009G119800 [exp] 351 / 2e-118 AT4G39150 511 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Potri.004G158300 [exp] 345 / 3e-116 AT4G39150 469 / 2e-167 DNAJ heat shock N-terminal domain-containing protein (.1.2) Potri.001G271300 [exp] 73 / 1e-13 AT5G48030 530 / 0.0 gametophytic factor 2 (.1) Potri.009G065500 [exp] 69 / 2e-12 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.003G031800 [exp] 64 / 8e-11 AT1G80030 607 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Potri.005G073900 [exp] 63 / 1e-10 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10030713 pacid=23155422 polypeptide=Lus10030713 locus=Lus10030713.g ID=Lus10030713.BGIv1.0 annot-version=v1.0 ATGCCGTACTGCTGCAGCTCCGTGTCACTGTGTGTCAGCATTCTCATTCTTACTTTCAACTTTTCCTTGCCGGATCTTGTGACTTCTCTTTCTCGCCGTC TCCCCCTCTTTCCTTTGCTCTGCGGATTCCTCCAGCTCGCCACCCCCCTTTCGTTCCTTCTTCACCACTTCAGATCCATCGGGGTTGTGCCGGAGATGGT AAAGGAGACGGAATATTACGATGTGCTTGGAGTCAGTCCGACGGCCACCGAGGCCGAGATTAAGAAAGCTTATTACGTAAAGGCACGGCAAGTTCACCCG GATAAAAACCCTAATGATCCTTTGGCTGCCCAGAATTTCCAGGCAAAGGATAGTGAGTTGTCTGCTGCTGTTTTTGAACTTATGAATCACGTCCTGGGAG AAGCGTACCAAGTATTGAGTGATAATGCCCAGAGAGAAGCATATGATGCTTATGGGAAGTCTGGAATATCAACTGACGCAATTATCGACCCTGCTGCGAT ATTTGCCATGCTTTTTGGTAGTGAGCTTTTTGAAGATTACATTGGGCAACTCGCCATGGCATCTATGGCTTCATCGGACCTTTTCGCAGAAGGGGAACAA GTTGATACCAGGAAGCTACAAGAAAAAATGAGGGTTGTTCAGAAGGAGAGAGAAGAGAAGCTCGCACAAATACTTAAAGATCGACTCAACCAATATGTAC ATGCAAAAGAAGAGTTTGTTAAGTATGCTGAGTCTGAAGTAACTAGACTCTCAAATGCAGCTTATGGTATTGATATGTTGAACACGATTGGCTACATTTA TGCTAGACAAGCAGCCAAAGAGCTGGGCAAGAAGGCTATATATTTGGGTGTGCCGTTTGTTGCTGAATGGTTTAGAAACAAAGGGCACTTCATCAAGTCT CAAGTCACTGCAGCAACAGGTGCCCTTGCCTTGATGCAGTTGCAAGAAGACATGAAAAAGCAGCTCAATGCTGAAGGAACATATACTGAAGAAGAGCTTG AACAATACATGCAGGCTCATAAGAAGACTATGATTGACTCACTGTGGAAGCTTAATGTGGCAGACATCGAGGCCACACTTTCCCGTGTTTGCCAGATGGT TCTTCAAGAGAGTGGTGTCAAGAAAGAGGAACTTCGCTCTCGAGCAAAGGCATTGAAGACTCTTGGTAAAATCTTTCAGAGTGTATCATTGGGCAATGGA AGCGAGGGTCAAATTAATGCTGACAGTGGCATTCATAAGCTGCATGGAAGTGAATCAAGCAATGAACCATGTTCTCCTACCACATCCCCGAAGCACACCA GTCCTCAAGAACCATCCTATAGCACATTGTCTTCACAGAGTCCGTATGTGGAGGCTCCGCAGGTTGCTGGCGGTCATTTTAACTACGACTTCCCAAGGCC GACAGCTCCACCTGGTGCTAATAGATATTCTTCATCCGGCGGCGAGGGTGCAAATCATTGA
AA sequence Show only first row Show all	>Lus10030713 pacid=23155422 polypeptide=Lus10030713 locus=Lus10030713.g ID=Lus10030713.BGIv1.0 annot-version=v1.0 MPYCCSSVSLCVSILILTFNFSLPDLVTSLSRRLPLFPLLCGFLQLATPLSFLLHHFRSIGVVPEMVKETEYYDVLGVSPTATEAEIKKAYYVKARQVHP DKNPNDPLAAQNFQAKDSELSAAVFELMNHVLGEAYQVLSDNAQREAYDAYGKSGISTDAIIDPAAIFAMLFGSELFEDYIGQLAMASMASSDLFAEGEQ VDTRKLQEKMRVVQKEREEKLAQILKDRLNQYVHAKEEFVKYAESEVTRLSNAAYGIDMLNTIGYIYARQAAKELGKKAIYLGVPFVAEWFRNKGHFIKS QVTAATGALALMQLQEDMKKQLNAEGTYTEEELEQYMQAHKKTMIDSLWKLNVADIEATLSRVCQMVLQESGVKKEELRSRAKALKTLGKIFQSVSLGNG SEGQINADSGIHKLHGSESSNEPCSPTTSPKHTSPQEPSYSTLSSQSPYVEAPQVAGGHFNYDFPRPTAPPGANRYSSSGGEGANH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21080			DNAJ heat shock N-terminal dom...		Lus10030713 [exp]	0	1
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10006650 [exp]	1.0	0.8739
AT5G60760			P-loop containing nucleoside t...		Lus10016116 [exp]	2.0	0.8363
AT1G09050			unknown protein		Lus10004495 [exp]	6.0	0.8092
AT5G46210		CUL4, ATCUL4	cullin4 (.1)		Lus10023306 [exp]	6.9	0.8311
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Lus10007933 [exp]	9.8	0.7768
AT5G05660		EBI, ATNFXL2	NFX1-like 2, EARLY BIRD, Arabi...		Lus10040200 [exp]	13.8	0.8088
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Lus10013286 [exp]	14.0	0.7661
AT3G53760		ATGCP4	GAMMA-TUBULIN COMPLEX PROTEIN ...		Lus10042807 [exp]	22.3	0.8082
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Lus10013469 [exp]	23.9	0.7342
AT1G18490			Protein of unknown function (D...		Lus10038962 [exp]	26.5	0.7478

Compare expression of checked genes

Lus10030713 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.