Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33560 409 / 4e-142 BUBR1 BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.1), BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.2) AT5G05510 98 / 3e-22 Mad3/BUB1 homology region 1 (.1) AT2G20635 87 / 1e-18 ATP binding;protein kinases;protein serine/threonine kinases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013199 [exp] 723 / 0 AT2G33560 426 / 1e-148 BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.1), BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.2) Lus10009836 [exp] 104 / 2e-24 AT5G05510 390 / 2e-131 Mad3/BUB1 homology region 1 (.1) Lus10040947 [exp] 101 / 2e-23 AT5G05510 388 / 2e-130 Mad3/BUB1 homology region 1 (.1) Lus10017714 [exp] 66 / 1e-11 AT2G20635 604 / 0.0 ATP binding;protein kinases;protein serine/threonine kinases (.1) Lus10033673 [exp] 65 / 3e-11 AT2G20635 620 / 0.0 ATP binding;protein kinases;protein serine/threonine kinases (.1) Lus10013201 [exp] 52 / 4e-07 AT3G13080 1498 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G258300 [exp] 481 / 1e-170 AT2G33560 480 / 4e-170 BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.1), BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.2) Potri.002G002900 [exp] 477 / 7e-169 AT2G33560 460 / 8e-162 BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.1), BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.2) Potri.010G185500 [exp] 108 / 1e-25 AT5G05510 261 / 8e-81 Mad3/BUB1 homology region 1 (.1) Potri.008G071900 [exp] 107 / 3e-25 AT5G05510 253 / 1e-77 Mad3/BUB1 homology region 1 (.1) Potri.007G139000 [exp] 84 / 2e-17 AT2G20635 681 / 0.0 ATP binding;protein kinases;protein serine/threonine kinases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08311 [flax] [poplar] Mad3_BUB1_I Mad3/BUB1 homology region 1
Representative CDS sequence Show only first row Show all	>Lus10030714 pacid=23155185 polypeptide=Lus10030714 locus=Lus10030714.g ID=Lus10030714.BGIv1.0 annot-version=v1.0 ATGGATCCAGAGACGCAGTTTCTGGCATCCAAACAAGAGACTGGGAACGAGTGGGAACTCTTCAAAGAAAATGTAAAGCCCCTCAAGAGAGGCCGCAACG TTACTCTCCTCAACCACGCTCTTAAATCCCAAACCAACTATCAACTCAAGGCCTCTCTTCTCCAGACCCGAAGGAAGTTGATTGACGCTATTGATGAGTA TAAGGGCGACGATCCTCTTCTTCCTTGGCTCCAGTGCATTAAATGGGTCCAGGAATCTTTCCCTGCCTGCGGTGATTCCTCGGGGCTCATACTACTGTAT GAGCAATGCGTGCGTTCTTTTTGGCATTCCCCACAATACAAGGATGACCTCCGCTACCTCAGGGTGTGGCTTCAATATGCTGAAAGTTGTGCTGATGCTC AAGTCATCTATAGCTTTCTGGATGAGAATGGCATCGGGAAGACACATGCCGAGTTCTACCTAGCGTATGCTTTGCACCTGGAGTCTAAGAGCAAGTTGAA ATCTGCCAATGACATTTTCTTTCTCGGACTATCAAGGGATGCCCAGCCTATACATAAATTGAAGGATGCCTACAAGACGTTCCTGGCCAGATCAACAAGT AGGAGCACACGTAGAGAGGAGGATAATAGCAAAGAAAGTACAATACCAGTTAGAAGCTTTGGCACTGTCCTTACTGGCTTTGGAAATGGAGCGCAACGCA AGAGTTCAGATCTTGTATTGAAAGGGTCAAACACAAACAAGGCTCAAAAGACTCCATTTTCTGTGTTTAAAGACATCAATGGAGAAGCGCAGCGTGTGAA TGAACAGTCAAAGACTGGTACGAACCAGTGGCAGAATCTTGGTGTCCGAGCTGAGAGGAACAAAGAAAACAATGCAATCCCTTCAAAGTGGACAAAATAC AAGATCCCACAGAAACCTGGTTCAGTTGTTGGAAGATCAGCAACTGGAAGCACCTCCTCCACCATTGAAGTGTTTGTTGACGAGGACTGCACCACAACAG AGGTGGACGGTTTCAGCGAGGATAGTGTGAAGAAGAATTCGAGCTTCCAGCTGAAGGAAGGGGATAGTCTAGACATCAAAAGAGAAGCAGGGTTACTGAG GGAGAATCCACTGCGTAATTTTCCTAGATGA
AA sequence Show only first row Show all	>Lus10030714 pacid=23155185 polypeptide=Lus10030714 locus=Lus10030714.g ID=Lus10030714.BGIv1.0 annot-version=v1.0 MDPETQFLASKQETGNEWELFKENVKPLKRGRNVTLLNHALKSQTNYQLKASLLQTRRKLIDAIDEYKGDDPLLPWLQCIKWVQESFPACGDSSGLILLY EQCVRSFWHSPQYKDDLRYLRVWLQYAESCADAQVIYSFLDENGIGKTHAEFYLAYALHLESKSKLKSANDIFFLGLSRDAQPIHKLKDAYKTFLARSTS RSTRREEDNSKESTIPVRSFGTVLTGFGNGAQRKSSDLVLKGSNTNKAQKTPFSVFKDINGEAQRVNEQSKTGTNQWQNLGVRAERNKENNAIPSKWTKY KIPQKPGSVVGRSATGSTSSTIEVFVDEDCTTTEVDGFSEDSVKKNSSFQLKEGDSLDIKREAGLLRENPLRNFPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Lus10030714 [exp]	0	1
AT1G49870			unknown protein		Lus10002116 [exp]	1.0	0.9787
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10006851 [exp]	1.4	0.9756
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Lus10013199 [exp]	2.4	0.9683
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Lus10007629 [exp]	2.6	0.9618
AT5G05510			Mad3/BUB1 homology region 1 (....		Lus10040947 [exp]	5.1	0.9527
AT3G06030		AtANP3, MAPKKK1...	NPK1-related protein kinase 3 ...		Lus10034060 [exp]	6.3	0.9624
AT3G44050			P-loop containing nucleoside t...		Lus10008438 [exp]	6.3	0.9661
AT3G27330			zinc finger (C3HC4-type RING f...		Lus10022324 [exp]	7.3	0.9590
AT2G36200			P-loop containing nucleoside t...		Lus10014216 [exp]	8.8	0.9619
AT3G12870			unknown protein		Lus10031776 [exp]	12.4	0.9478

Compare expression of checked genes

Lus10030714 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.