Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20925 255 / 2e-80 Auxin efflux carrier family protein (.1) AT1G76520 251 / 3e-80 Auxin efflux carrier family protein (.1.2) AT5G65980 206 / 1e-62 Auxin efflux carrier family protein (.1) AT2G17500 205 / 3e-62 Auxin efflux carrier family protein (.1.2.3.4) AT1G76530 132 / 2e-34 Auxin efflux carrier family protein (.1) AT1G71090 85 / 9e-18 Auxin efflux carrier family protein (.1) AT5G01990 77 / 5e-15 Auxin efflux carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025166 [exp] 350 / 1e-118 AT1G76520 455 / 8e-160 Auxin efflux carrier family protein (.1.2) Lus10016046 [exp] 347 / 8e-117 AT1G20925 392 / 2e-133 Auxin efflux carrier family protein (.1) Lus10004287 [exp] 239 / 5e-75 AT1G20925 430 / 1e-148 Auxin efflux carrier family protein (.1) Lus10013200 [exp] 203 / 9e-64 AT1G76520 94 / 1e-33 Auxin efflux carrier family protein (.1.2) Lus10035978 [exp] 200 / 3e-60 AT5G65980 486 / 2e-172 Auxin efflux carrier family protein (.1) Lus10001303 [exp] 199 / 5e-60 AT5G65980 491 / 6e-174 Auxin efflux carrier family protein (.1) Lus10012708 [exp] 199 / 9e-60 AT5G65980 494 / 2e-175 Auxin efflux carrier family protein (.1) Lus10019229 [exp] 134 / 4e-34 AT5G23490 667 / 0.0 unknown protein Lus10016688 [exp] 129 / 3e-32 AT2G17525 655 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G003500 [exp] 299 / 2e-98 AT1G20925 499 / 4e-176 Auxin efflux carrier family protein (.1) Potri.001G456300 [exp] 253 / 3e-80 AT1G76520 382 / 5e-131 Auxin efflux carrier family protein (.1.2) Potri.011G145600 [exp] 234 / 2e-73 AT1G76520 368 / 2e-125 Auxin efflux carrier family protein (.1.2) Potri.001G456400 [exp] 230 / 7e-72 AT1G76520 419 / 1e-145 Auxin efflux carrier family protein (.1.2) Potri.003G108100 [exp] 222 / 2e-68 AT1G76520 398 / 4e-137 Auxin efflux carrier family protein (.1.2) Potri.005G099300 [exp] 205 / 7e-62 AT2G17500 475 / 2e-167 Auxin efflux carrier family protein (.1.2.3.4) Potri.001G125501 [exp] 132 / 4e-34 AT1G76520 266 / 6e-85 Auxin efflux carrier family protein (.1.2) Potri.011G145700 [exp] 127 / 1e-32 AT1G76520 396 / 2e-136 Auxin efflux carrier family protein (.1.2) Potri.004G093200 [exp] 88 / 1e-18 AT1G71090 513 / 1e-180 Auxin efflux carrier family protein (.1) Potri.017G122400 [exp] 79 / 6e-16 AT1G71090 580 / 0.0 Auxin efflux carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF03547 [flax] [poplar] Mem_trans Membrane transport protein
Representative CDS sequence Show only first row Show all	>Lus10030715 pacid=23155336 polypeptide=Lus10030715 locus=Lus10030715.g ID=Lus10030715.BGIv1.0 annot-version=v1.0 ATGGGGCTATTAGATCTATTCGAAGCGTCATCCATCTCGGTCCTCAAGGTCCTACTCATCACTGCACTCGGCACCTTCCTCGCCCTTGACCGCGTCGATG TCCTCGGTCCCCATGCCAGAAAACACGTCAACAACGTGGTGTTCTACGTGTTCAACCCAGCACTGATGGTGGCCAGCCTGTCGACGACCATCACCTGGGA ACAGCTGGCGAAGCTGTGGTTCATGCCGGTCAACATTCTCGTAACGTTCGTGGTCGGGTCAGCGCTGGGTTGGTTGGTCATACGGTTGACCAAGCCGCCA AAAGAGCTGAAAGGACTGATAATAGGGTGCTGCGCTGGGGGCAATTTGGGGAATCTGCTAATGGTTGGAGCAGTTTACATATGGACTTACGTGTACAGCA TTATGCGGGCGTCAATTACTTCTTCTTCAGCAGCAGGTGGCGACGACGTCGTTGAAGAAGCCGCGGACAGCAAGCTCCATATAAGTATTAGCAGTGACCG CACAACAACAACCACCACGGCGGTGCTTAATAACATTGCAGTAGATGATATTAATGACGACGACTACAATAAAATTTGCGTCGAAGACCCACTTCTTACA AAAACTGACACGTTGATGATCAGTACTCCAAAGCTGAGGCAGAGAATGTGCAGCACGTTGGCAAGTATTGTTGGACTGGTGATCGCGCTTATCACACCAT TAAAGAACATGTTGGTGGGCGAGGGAGCACCACTTCGAGCTATTCAAGATAGCGTTGTTCTGTTAGGAGATCCAACCATCCCCACTCTCACCCTGCTTGT CGGAGCTAACCTACTCAGAGGGCTGAAAGGGGCAGGGGTGAAGAAGACGGTGATATTAGGGATAATAATTGCTCGATACGTTGCGTTGCCTCTGGTTGGA ATACTGGTAGTGAAAGGAGCTCTGCGTTTCGGTTTCATTCCATCATCAGACCCTCTTTACCAGTTCGTTCTCCTCCTTCAGTTCACCATCCCCCCTGCTA TGAACATTGGTCAGCGTAATAACTCAGCTGTTCGGAGAAGGAGAGTCAGAGTGTTCCGTGATCATGCTATGGACTTACGTCTTAGCTTCCGTCTCTCTAA CCCTCTGGTCCACCTGCTTCATGTGGCTCGTCCTCCCTTCTTGACCGTGATCGAGATATTTGAAATAGCTAGCGATTTGAAATGA
AA sequence Show only first row Show all	>Lus10030715 pacid=23155336 polypeptide=Lus10030715 locus=Lus10030715.g ID=Lus10030715.BGIv1.0 annot-version=v1.0 MGLLDLFEASSISVLKVLLITALGTFLALDRVDVLGPHARKHVNNVVFYVFNPALMVASLSTTITWEQLAKLWFMPVNILVTFVVGSALGWLVIRLTKPP KELKGLIIGCCAGGNLGNLLMVGAVYIWTYVYSIMRASITSSSAAGGDDVVEEAADSKLHISISSDRTTTTTTAVLNNIAVDDINDDDYNKICVEDPLLT KTDTLMISTPKLRQRMCSTLASIVGLVIALITPLKNMLVGEGAPLRAIQDSVVLLGDPTIPTLTLLVGANLLRGLKGAGVKKTVILGIIIARYVALPLVG ILVVKGALRFGFIPSSDPLYQFVLLLQFTIPPAMNIGQRNNSAVRRRRVRVFRDHAMDLRLSFRLSNPLVHLLHVARPPFLTVIEIFEIASDLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20925			Auxin efflux carrier family pr...		Lus10030715 [exp]	0	1
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10041507 [exp]	2.0	0.9166
AT3G52740			unknown protein		Lus10022717 [exp]	2.4	0.8953
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10012586 [exp]	2.8	0.9161
AT5G05690		CBB3, DWF3, CYP...	DWARF 3, CYTOCHROME P450 90A1,...		Lus10028297 [exp]	4.0	0.8578
AT1G09790		COBL6	COBRA-like protein 6 precursor...		Lus10010097 [exp]	4.5	0.8793
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10040525 [exp]	5.0	0.8754
AT4G37220			Cold acclimation protein WCOR4...		Lus10027945 [exp]	5.5	0.8628
AT5G28237			Pyridoxal-5'-phosphate-depende...		Lus10007651 [exp]	5.7	0.8316
					Lus10010603 [exp]	5.9	0.8597
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10003195 [exp]	6.0	0.8559

Compare expression of checked genes

Lus10030715 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.